##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545230_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3101967 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.208213691506067 31.0 31.0 34.0 30.0 34.0 2 31.466123269525433 31.0 31.0 34.0 30.0 34.0 3 31.555378893456957 31.0 31.0 34.0 30.0 34.0 4 35.29701412039522 37.0 35.0 37.0 33.0 37.0 5 35.13899245220855 37.0 35.0 37.0 32.0 37.0 6 35.12394039008152 37.0 35.0 37.0 32.0 37.0 7 35.84157536169791 37.0 35.0 37.0 35.0 37.0 8 35.9656179450007 37.0 35.0 37.0 35.0 37.0 9 37.6590943746339 39.0 37.0 39.0 35.0 39.0 10 36.80881518081914 39.0 37.0 39.0 32.0 39.0 11 36.3653078836751 38.0 35.0 39.0 32.0 39.0 12 35.00281079714903 35.0 34.0 39.0 30.0 39.0 13 34.328995763011015 35.0 33.0 39.0 25.0 39.0 14 34.96566823567111 36.0 33.0 40.0 25.0 41.0 15 35.61435179677927 36.0 33.0 40.0 30.0 41.0 16 35.68250178032197 35.0 34.0 40.0 31.0 41.0 17 35.808882557422436 36.0 34.0 40.0 31.0 41.0 18 35.929782940953274 36.0 35.0 40.0 31.0 41.0 19 35.85021665285285 36.0 35.0 40.0 31.0 41.0 20 35.66920215463285 35.0 34.0 40.0 31.0 41.0 21 35.495988835471174 35.0 34.0 40.0 30.0 41.0 22 35.381665891352164 35.0 34.0 40.0 30.0 41.0 23 35.3757583494602 35.0 34.0 40.0 30.0 41.0 24 35.22332668271455 35.0 34.0 40.0 29.0 41.0 25 35.2239888432082 35.0 34.0 40.0 30.0 41.0 26 35.08896451832015 35.0 34.0 40.0 29.0 41.0 27 35.017565950895026 35.0 34.0 40.0 29.0 41.0 28 35.115047323198475 35.0 34.0 40.0 29.0 41.0 29 35.19389342310863 36.0 34.0 40.0 29.0 41.0 30 35.130222532992775 36.0 34.0 40.0 29.0 41.0 31 34.930047289348984 35.0 34.0 40.0 29.0 41.0 32 34.75343096815666 35.0 34.0 40.0 29.0 41.0 33 34.58402265401276 35.0 33.0 40.0 27.0 41.0 34 34.4590751610188 35.0 34.0 40.0 27.0 41.0 35 34.28322609492622 35.0 33.0 39.0 27.0 41.0 36 34.02771241602506 35.0 33.0 39.0 24.0 41.0 37 33.815239491587114 35.0 33.0 39.0 23.0 41.0 38 33.961969937139884 35.0 33.0 39.0 25.0 41.0 39 34.031527414701706 35.0 33.0 39.0 25.0 41.0 40 33.819691827798295 35.0 33.0 39.0 23.0 41.0 41 33.93516887832785 35.0 33.0 39.0 24.0 41.0 42 33.91128048751002 35.0 33.0 39.0 24.0 41.0 43 33.76705071330546 35.0 33.0 39.0 24.0 41.0 44 33.73479472863509 35.0 33.0 39.0 24.0 41.0 45 33.68154561283212 35.0 33.0 39.0 23.0 41.0 46 33.65196567210418 35.0 33.0 39.0 23.0 41.0 47 33.7002021620475 35.0 33.0 39.0 24.0 41.0 48 33.73252810232991 35.0 33.0 39.0 24.0 41.0 49 33.77641187027457 35.0 33.0 39.0 24.0 41.0 50 33.52031340114192 35.0 33.0 39.0 24.0 40.0 51 33.318011442417024 35.0 32.0 38.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 5.0 14 30.0 15 76.0 16 277.0 17 838.0 18 1827.0 19 3623.0 20 6216.0 21 9912.0 22 15353.0 23 22068.0 24 30727.0 25 42246.0 26 55002.0 27 65201.0 28 73493.0 29 85132.0 30 102148.0 31 126757.0 32 160054.0 33 212745.0 34 377835.0 35 565219.0 36 184602.0 37 211796.0 38 293598.0 39 454797.0 40 387.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.46168221647748 24.31125153813693 30.39084555058129 13.836220694804297 2 28.781060533525988 26.53477615977217 31.064321445070174 13.619841861631668 3 27.342618409544656 25.956691351004057 32.78893682621381 13.91175341323747 4 24.710804466972085 29.368752149845566 31.561328666617023 14.359114716565328 5 22.40001263714282 33.48269017691033 30.068276032594802 14.04902115335205 6 19.67890051699454 41.91650007882096 27.59765013618778 10.806949267996727 7 87.61053873235917 4.944959117875851 5.904060230170082 1.5404419195948893 8 90.30640880447794 3.188492978809897 5.299121492910788 1.2059767238013814 9 86.82867999562858 4.339988143007324 6.826345992720103 2.0049858686439928 10 59.420329100857614 22.682414094024857 11.041703538432227 6.855553266685301 11 54.31875967732732 17.159982681956322 19.266194643592275 9.255062997124083 12 49.686956695541895 21.12082430277305 20.28358135337997 8.908637648305092 13 19.082246845308156 51.609446522158365 19.438859278644806 9.869447353888678 14 11.292512138265815 51.06108478910317 25.81532943451687 11.831073638114137 15 9.902458665743382 23.22358684022106 56.219166741619105 10.65478775241645 16 10.79556939193744 16.66723082482825 53.93890392773359 18.59829585550072 17 11.133226111045023 17.031580284380844 30.156961695595086 41.67823190897904 18 17.48825825677707 22.27215827892431 41.020004403657424 19.219579060641202 19 30.439201964430957 22.38511886167712 26.87639810481543 20.299281069076493 20 32.154307250850835 21.825409490171882 27.599745580787932 18.420537678189355 21 18.163281556509144 31.865071420811375 29.736776696850743 20.23487032582874 22 20.49696208889392 25.488762452985476 22.833995332638935 31.18028012548167 23 14.09795784416791 33.221243166029815 25.573063801130058 27.107735188672223 24 13.820617691935471 22.744116878097024 49.51045578499062 13.924809644976882 25 11.373235111785522 27.136233235234286 43.91713387021848 17.573397782761713 26 11.6162422101847 40.45990818084138 28.478736234137887 19.445113374836033 27 11.839358703687047 44.707309910131215 27.30141874494474 16.151912641236997 28 9.8757014500799 33.598713332540285 41.93339258605911 14.592192631320708 29 10.133537848726307 25.378058502878982 41.45895169097544 23.029451957419276 30 15.1016113324223 37.13350270973225 32.57326722044432 15.19161873740114 31 30.867607553529748 30.627147226259982 23.921724505773273 14.583520714437 32 33.81425398787285 24.77202368690576 27.06569734623225 14.348024978989137 33 31.82896529847029 28.365066423981943 21.308092574808178 18.497875702739584 34 17.978334392338795 27.16785832989197 27.13610428479736 27.717702992971876 35 18.152288531760654 25.233537300686955 33.46757073818 23.146603429372394 36 34.75604350400891 25.263872890975307 24.376693884880144 15.603389720135644 37 17.303536755871356 39.2448726888455 29.34257521114828 14.109015344134868 38 16.383636576404584 39.03558612970415 25.07924810289729 19.50152919099397 39 18.35609469733237 37.29662501245178 27.650261914456216 16.69701837575964 40 25.276735697059316 25.137050136252252 25.362455500010157 24.223758666678272 41 13.836704258942795 24.064923965986743 28.092207299432907 34.006164475637554 42 17.687744582711552 22.558073635212754 26.67081887073589 33.083362911339805 43 18.201064034530347 23.78629430938498 28.749693339742173 29.262948316342502 44 14.199603026079904 31.601367777284544 32.450280741220006 21.748748455415548 45 12.996559924718735 46.4453038991066 21.74932873238174 18.808807443792922 46 19.325189468488865 38.59515591236141 24.868897702651253 17.210756916498468 47 17.990681396675075 30.44181321077884 27.185717965407115 24.381787427138974 48 18.729502925079476 25.288953750958665 36.97270151487749 19.008841809084366 49 20.678298640830157 25.81323398991672 35.606858486889124 17.901608882364 50 18.170019216838863 40.101974005526166 25.918586496890523 15.809420280744444 51 15.583112263928017 37.47373843757848 25.135696156664466 21.80745314182904 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 10299.0 1 8592.0 2 6885.0 3 13456.5 4 20028.0 5 14363.5 6 8699.0 7 9491.0 8 10283.0 9 11440.5 10 12598.0 11 13853.0 12 15108.0 13 14926.0 14 14744.0 15 13571.0 16 12398.0 17 11334.5 18 10271.0 19 10381.5 20 10492.0 21 11545.5 22 12599.0 23 15277.5 24 17956.0 25 18175.5 26 23112.5 27 27830.0 28 36045.5 29 44261.0 30 52727.0 31 61193.0 32 67002.5 33 72812.0 34 90305.5 35 107799.0 36 115864.0 37 123929.0 38 147183.0 39 170437.0 40 244403.5 41 318370.0 42 363976.5 43 409583.0 44 428281.5 45 446980.0 46 390508.0 47 334036.0 48 290972.5 49 247909.0 50 212324.0 51 176739.0 52 150720.0 53 124701.0 54 101173.0 55 77645.0 56 64777.0 57 51909.0 58 44051.0 59 36193.0 60 32110.5 61 28028.0 62 24594.5 63 21161.0 64 18492.5 65 15824.0 66 12774.0 67 9724.0 68 7646.5 69 5569.0 70 4598.5 71 3628.0 72 3014.0 73 2400.0 74 1919.0 75 1100.0 76 762.0 77 455.0 78 148.0 79 132.0 80 116.0 81 88.5 82 61.0 83 42.0 84 23.0 85 12.5 86 2.0 87 1.5 88 1.0 89 1.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3101967.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 14.229414016099732 #Duplication Level Percentage of deduplicated Percentage of total 1 77.87976091848748 11.081833615840218 2 9.228290697659848 2.6262633799584756 3 3.522744592246474 1.5037977382815453 4 1.8228826635912077 1.0375420849203978 5 1.1261541829962085 0.8012257057907797 6 0.7451629780377496 0.6361939514381382 7 0.5207904895751714 0.5187380444268668 8 0.3860871029843844 0.43950345877130714 9 0.29560109748870317 0.3785607359802194 >10 2.1469097493692435 6.797779520296701 >50 0.7341104525885708 7.630906738870073 >100 1.361266715947466 44.4816371328713 >500 0.21687421802489337 18.664452874929673 >1k 0.01242630654629119 2.200329716919331 >5k 7.033758422428974E-4 0.7734666225502671 >10k+ 2.3445861408096582E-4 0.42776867815474146 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12822 0.41335062558692603 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 9331 0.3008091317541418 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 8224 0.26512209833309 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 5629 0.1814655023731716 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03278564859007204 0.0 2 3.223760923310918E-5 0.0 0.0 0.11773174891931475 0.0 3 3.223760923310918E-5 0.0 0.0 0.16515327210121836 0.0 4 3.223760923310918E-5 0.0 0.0 0.2292094016474063 0.0 5 3.223760923310918E-5 0.0 0.0 0.41692900021180107 0.0 6 3.223760923310918E-5 0.0 0.0 0.5726366528077185 0.0 7 3.223760923310918E-5 0.0 0.0 0.6952040431119996 0.0 8 3.223760923310918E-5 0.0 0.0 0.981731913975874 0.0 9 3.223760923310918E-5 0.0 0.0 1.086278480718847 0.0 10 3.223760923310918E-5 0.0 0.0 1.2664544787226943 0.0 11 6.447521846621836E-5 0.0 0.0 1.4752897113347756 0.0 12 9.671282769932755E-5 0.0 0.0 1.6532735519107715 0.0 13 1.2895043693243673E-4 0.0 0.0 1.7240351041774462 0.0 14 1.2895043693243673E-4 0.0 0.0 1.7467626186867882 0.0 15 1.2895043693243673E-4 0.0 0.0 1.789864302231455 0.0 16 1.2895043693243673E-4 0.0 0.0 1.8946687698482931 0.0 17 1.2895043693243673E-4 0.0 0.0 2.0293897388334563 0.0 18 1.6118804616554593E-4 0.0 0.0 2.2368065166392808 0.0 19 1.6118804616554593E-4 0.0 0.0 2.318270955171348 0.0 20 1.6118804616554593E-4 0.0 0.0 2.3997353937034145 0.0 21 1.934256553986551E-4 0.0 0.0 2.5263969603803007 0.0 22 1.934256553986551E-4 0.0 0.0 2.653445378367984 0.0 23 1.934256553986551E-4 0.0 0.0 2.8169222947890806 0.0 24 1.934256553986551E-4 0.0 0.0 2.9351698454561252 0.0 25 1.934256553986551E-4 0.0 0.0 3.0322372868570167 0.0 26 1.934256553986551E-4 0.0 0.0 3.1325607267904525 0.0 27 1.934256553986551E-4 0.0 0.0 3.2251471405079424 0.0 28 2.256632646317643E-4 0.0 0.0 3.3250514915213474 0.0 29 2.256632646317643E-4 0.0 0.0 3.443524705453024 0.0 30 2.256632646317643E-4 0.0 0.0 3.6072595227479853 0.0 31 2.256632646317643E-4 0.0 0.0 3.757357831337342 0.0 32 2.5790087386487346E-4 0.0 0.0 3.878506766835366 0.0 33 2.5790087386487346E-4 0.0 0.0 4.002621562382837 0.0 34 2.5790087386487346E-4 0.0 0.0 4.133474018260027 0.0 35 2.901384830979827E-4 0.0 0.0 4.333572858769935 0.0 36 2.901384830979827E-4 0.0 0.0 4.4807053073098455 0.0 37 2.901384830979827E-4 0.0 0.0 4.630255576542239 0.0 38 2.901384830979827E-4 0.0 0.0 4.7692963851646395 0.0 39 2.901384830979827E-4 0.0 0.0 4.918588753523168 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGGGTT 40 6.8212103E-9 45.000004 5 CTACCGT 40 6.8212103E-9 45.000004 30 CCAACCG 20 7.0351415E-4 45.000004 1 ATCGGAT 40 6.8212103E-9 45.000004 42 ACTCACG 20 7.0351415E-4 45.000004 44 TTCGATC 20 7.0351415E-4 45.000004 37 TATCGCC 20 7.0351415E-4 45.000004 38 GTTAGCG 45 3.8562575E-10 45.0 1 CCGTTAT 35 1.2128294E-7 45.0 14 TCGATTG 60 0.0 44.999996 1 GGGCGTA 60 0.0 44.999996 8 GTATACG 215 0.0 43.953487 1 ACGGGTA 230 0.0 43.04348 5 GTCGAAG 215 0.0 42.906975 1 TGCGTAG 310 0.0 42.82258 1 CGTTAGG 410 0.0 42.80488 2 TCGAACG 100 0.0 42.75 1 TTCGCGG 425 0.0 42.352943 2 CGGTCTA 395 0.0 42.151897 31 CGTTTTT 10140 0.0 42.093193 1 >>END_MODULE