##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545228_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4403799 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.134940763645208 31.0 31.0 33.0 30.0 34.0 2 31.421499255529145 31.0 31.0 34.0 30.0 34.0 3 31.495547140094267 31.0 31.0 34.0 30.0 34.0 4 35.278700049661666 37.0 35.0 37.0 33.0 37.0 5 35.14085384005946 37.0 35.0 37.0 32.0 37.0 6 35.136120426931384 37.0 35.0 37.0 32.0 37.0 7 35.79200776420541 37.0 35.0 37.0 35.0 37.0 8 35.865754090956464 37.0 35.0 37.0 35.0 37.0 9 37.46060435546672 39.0 37.0 39.0 35.0 39.0 10 36.686636924164794 39.0 35.0 39.0 32.0 39.0 11 36.385121119288144 38.0 35.0 39.0 32.0 39.0 12 35.79994114172786 37.0 35.0 39.0 31.0 39.0 13 35.549534617724376 37.0 35.0 39.0 30.0 39.0 14 36.36121289822719 38.0 35.0 40.0 30.0 41.0 15 36.67844876662173 38.0 35.0 40.0 31.0 41.0 16 36.53071223277902 38.0 35.0 40.0 31.0 41.0 17 36.587567461639374 38.0 35.0 40.0 31.0 41.0 18 36.593988281481515 38.0 35.0 40.0 31.0 41.0 19 36.51534686301532 38.0 35.0 40.0 31.0 41.0 20 36.39414015035654 38.0 35.0 40.0 31.0 41.0 21 36.28429249382181 38.0 35.0 40.0 30.0 41.0 22 36.19014332852158 38.0 34.0 40.0 30.0 41.0 23 36.11248969355777 38.0 34.0 40.0 30.0 41.0 24 35.908204257278776 37.0 34.0 40.0 30.0 41.0 25 35.867419471233816 37.0 34.0 40.0 30.0 41.0 26 35.74121934266301 37.0 34.0 40.0 30.0 41.0 27 35.72111124962788 37.0 34.0 40.0 29.0 41.0 28 35.69247892558221 37.0 34.0 40.0 29.0 41.0 29 35.62999355783495 37.0 34.0 40.0 29.0 41.0 30 35.50153424350203 37.0 34.0 40.0 29.0 41.0 31 35.3835838102511 37.0 34.0 40.0 28.0 41.0 32 35.23003910941439 37.0 34.0 40.0 27.0 41.0 33 35.01346519221245 37.0 34.0 40.0 26.0 41.0 34 34.79793287568302 37.0 34.0 40.0 25.0 41.0 35 34.61416585997681 37.0 33.0 40.0 24.0 41.0 36 34.43988020343345 37.0 33.0 40.0 24.0 41.0 37 34.26412717746655 36.0 33.0 40.0 23.0 41.0 38 34.2792670600997 36.0 33.0 40.0 23.0 41.0 39 34.2618945596745 36.0 33.0 40.0 23.0 41.0 40 34.14458402847178 36.0 33.0 40.0 23.0 41.0 41 34.09359191915889 36.0 33.0 40.0 23.0 41.0 42 34.02047482185268 36.0 33.0 40.0 23.0 41.0 43 33.88318063562846 36.0 33.0 40.0 23.0 41.0 44 33.837375184471405 35.0 33.0 40.0 23.0 41.0 45 33.784901626981615 35.0 33.0 40.0 23.0 41.0 46 33.688107245585 35.0 33.0 40.0 23.0 41.0 47 33.70752343601513 35.0 33.0 40.0 23.0 41.0 48 33.65866175999404 35.0 33.0 40.0 23.0 41.0 49 33.619465602312914 35.0 32.0 39.0 23.0 41.0 50 33.44781153726589 35.0 32.0 39.0 22.0 41.0 51 33.28469214875611 35.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 6.0 11 5.0 12 8.0 13 28.0 14 55.0 15 183.0 16 536.0 17 1398.0 18 3110.0 19 6060.0 20 10073.0 21 15793.0 22 23290.0 23 33136.0 24 45925.0 25 64194.0 26 81743.0 27 95289.0 28 104585.0 29 117345.0 30 137206.0 31 166012.0 32 202808.0 33 257542.0 34 391658.0 35 523028.0 36 349413.0 37 421014.0 38 568638.0 39 783313.0 40 403.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.72283794060537 23.426387080790924 27.004524956747574 15.846250021856129 2 34.94480560988365 24.14574325485791 27.41451187940231 13.494939255856137 3 29.188298557677133 25.62948490610039 31.45958750615094 13.722629030071538 4 25.86316950433024 27.948051216688135 30.98903923635025 15.199740042631374 5 22.126918144992537 32.02412280851147 30.439036840691415 15.40992220580458 6 21.75653339309991 39.346209942824366 28.760713193313318 10.136543470762403 7 84.24521645969763 4.846065862679018 8.857284358346055 2.0514333192772876 8 85.08801151006212 4.093556495198804 8.733936312715453 2.0844956820236344 9 79.98875516343956 6.088425016673104 10.486173415271677 3.436646404615651 10 45.031641998192924 25.66699797152413 17.22941941718957 12.071940613093377 11 36.46076944020379 24.33519331831448 24.821319047486046 14.382718193995684 12 33.40458999150506 22.748971967158354 29.010542942582074 14.835895098754506 13 22.32374820013357 33.054301524660865 28.66577243875118 15.956177836454389 14 17.938965879232907 35.57535209940327 30.42482184132382 16.060860180040006 15 16.508269337451594 24.800972978103676 42.94494367249732 15.745814011947413 16 19.495848924984998 21.30094947566862 40.523148308994124 18.680053290352262 17 19.23282602135111 21.44984364636079 31.465741283832436 27.85158904845566 18 21.641064907821633 24.00847540952709 35.17160978509691 19.17884989755436 19 27.773338428933748 24.901227326678622 28.43370008485855 18.89173415952908 20 28.954954574448106 24.61165916064743 28.343368986640854 18.09001727826361 21 23.558522993442708 27.720838303473887 30.652693276872988 18.067945426210414 22 21.990694852330908 25.006114039264737 28.417827425820295 24.58536368258406 23 19.803969254727566 29.164205723285736 28.96955560414996 22.062269417836735 24 19.506203621009952 25.052914540377525 37.69300097484013 17.74788086377239 25 19.518170561372123 26.629893871178044 34.130190773920425 19.721744793529407 26 18.399886098343725 31.844686826079027 28.923209256371603 20.832217819205646 27 18.0044547900574 32.09104230233941 30.5996254597451 19.304877447858086 28 17.46962111576845 28.62351347098267 35.644156329569086 18.262709083679795 29 18.408832919031955 26.043332132097763 35.02639425641361 20.52144069245667 30 20.204895818360466 29.52614322315801 31.528346320983314 18.740614637498215 31 25.919825132800113 27.257692733024374 28.78010554069339 18.04237659348213 32 27.613476455215146 25.345366580082334 28.84441365284837 18.196743311854153 33 27.03842750316261 26.758714464488502 26.834058502670082 19.368799529678807 34 20.633026166725593 26.71218645537637 29.16513673762131 23.489650640276725 35 21.009405742632666 26.493171009848542 31.116020508656277 21.381402738862516 36 26.819798087969048 27.54912292772672 26.846525011700123 18.784553972604108 37 20.607252964996814 33.04553636530641 27.945825865349438 18.401384804347337 38 20.39093973180883 33.08956653107919 26.405133385969705 20.114360351142274 39 20.516376882777802 31.912015057907954 27.76931917192406 19.802288887390183 40 23.693179457100563 25.9219369458052 28.614384988960666 21.77049860813357 41 18.7717014332398 25.66470449718527 29.180260043657757 26.383334025917165 42 19.933925231374094 27.150149223431857 27.237846232309877 25.678079312884172 43 19.968758792124707 26.5316605049413 28.985632632188707 24.513948070745283 44 19.468213694585064 28.234508432378497 31.208463419879063 21.088814453157376 45 18.36405340025737 34.11754260355661 26.496872359524133 21.02153163666189 46 20.308488193943454 32.3916463943972 27.238323093311024 20.061542318348316 47 19.660888246716073 29.161821418279988 28.79089168238605 22.386398652617885 48 20.293682795241107 27.365554149950988 31.73478171914749 20.605981335660413 49 20.669313018146376 27.502526795614422 32.11113858738784 19.717021598851357 50 19.49509957198319 32.588953310539374 28.098375970383753 19.81757114709368 51 18.64115505725852 31.973802619056862 27.867938568495067 21.517103755189552 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 10246.0 1 9815.0 2 9384.0 3 32701.5 4 56019.0 5 39991.5 6 23964.0 7 23522.0 8 23080.0 9 24119.0 10 25158.0 11 25864.5 12 26571.0 13 26298.0 14 26025.0 15 26002.0 16 25979.0 17 25378.0 18 24777.0 19 24646.5 20 24516.0 21 24621.0 22 24726.0 23 27424.5 24 30123.0 25 35189.5 26 45801.0 27 51346.0 28 59382.5 29 67419.0 30 82908.0 31 98397.0 32 110890.5 33 123384.0 34 142816.5 35 162249.0 36 167669.5 37 173090.0 38 199964.5 39 226839.0 40 268339.0 41 309839.0 42 343086.0 43 376333.0 44 375241.0 45 374149.0 46 357119.5 47 340090.0 48 318188.5 49 296287.0 50 271789.5 51 247292.0 52 223817.0 53 200342.0 54 185299.0 55 170256.0 56 164566.0 57 158876.0 58 152122.5 59 145369.0 60 138896.0 61 132423.0 62 119306.0 63 106189.0 64 95136.5 65 84084.0 66 72257.5 67 60431.0 68 51105.5 69 41780.0 70 36243.0 71 30706.0 72 27515.5 73 24325.0 74 20060.0 75 11955.5 76 8116.0 77 5898.0 78 3680.0 79 2891.5 80 2103.0 81 1483.0 82 863.0 83 654.0 84 445.0 85 365.5 86 286.0 87 211.5 88 137.0 89 82.0 90 27.0 91 21.5 92 16.0 93 11.0 94 6.0 95 5.5 96 5.0 97 3.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 4403799.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.56567724025896 #Duplication Level Percentage of deduplicated Percentage of total 1 80.04730146993484 14.861323630445167 2 6.734100376863841 2.500462682007206 3 2.3844984252625205 1.3280948442998912 4 1.3293433314354908 0.9872063693168766 5 0.9116130314180068 0.8462356654660382 6 0.7009349093435612 0.7807998775981639 7 0.5728892628230605 0.744525400358798 8 0.45125667760440796 0.6702308663132026 9 0.3813324523146226 0.6371725707818752 >10 3.946252881612309 17.176667090877835 >50 1.3879021093312336 18.374910151085107 >100 1.1381944659074426 37.908355692875325 >500 0.011983838457266917 1.406148065786737 >1k 0.001892185019568455 0.5304115753224952 >5k 3.78437003913691E-4 0.45514034593859815 >10k+ 1.2614566797123034E-4 0.7923151715266397 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 33831 0.7682230728514176 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 8753 0.1987602068123454 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5580 0.12670878030536817 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 5101 0.11583180794582132 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.2707666721392143E-5 0.0 0.0 0.015259552036775521 0.0 2 2.2707666721392143E-5 0.0 0.0 0.05329489379510736 0.0 3 2.2707666721392143E-5 0.0 0.0 0.0878786702117876 0.0 4 2.2707666721392143E-5 0.0 0.0 0.1312048983162038 0.0 5 2.2707666721392143E-5 0.0 0.0 0.2468323372615326 0.0 6 4.541533344278429E-5 0.0 0.0 0.4067624339802975 0.0 7 4.541533344278429E-5 0.0 0.0 0.5141469899057609 0.0 8 4.541533344278429E-5 0.0 0.0 0.754575765151861 0.0 9 4.541533344278429E-5 0.0 0.0 0.8682957600925928 0.0 10 4.541533344278429E-5 0.0 0.0 1.0393753211715613 0.0 11 4.541533344278429E-5 0.0 0.0 1.1913577345378388 0.0 12 4.541533344278429E-5 0.0 0.0 1.3177258998423862 0.0 13 4.541533344278429E-5 0.0 0.0 1.3733823909765182 0.0 14 4.541533344278429E-5 0.0 0.0 1.4028115270474424 0.0 15 4.541533344278429E-5 0.0 0.0 1.435964720460675 0.0 16 6.812300016417644E-5 0.0 0.0 1.505745380295513 0.0 17 1.1353833360696072E-4 0.0 0.0 1.5842684918180872 0.0 18 1.3624600032835287E-4 0.0 0.0 1.702098574435391 0.0 19 1.3624600032835287E-4 0.0 0.0 1.7615018305785528 0.0 20 1.3624600032835287E-4 0.0 0.0 1.827467602404197 0.0 21 1.3624600032835287E-4 0.0 0.0 1.911781168940726 0.0 22 1.8166133377113715E-4 0.0 0.0 2.001953313491374 0.0 23 1.8166133377113715E-4 0.0 0.0 2.1111771904212704 0.0 24 2.0436900049252928E-4 0.0 0.0 2.1993283526337146 0.0 25 2.0436900049252928E-4 0.0 0.0 2.2740138684803735 0.0 26 2.0436900049252928E-4 0.0 0.0 2.3483133539927685 0.0 27 2.0436900049252928E-4 0.0 0.0 2.429425139521581 0.0 28 2.2707666721392145E-4 0.0 0.0 2.512149169387613 0.0 29 2.4978433393531356E-4 0.0 0.0 2.615287391636176 0.0 30 2.4978433393531356E-4 0.0 0.0 2.7619335033229264 0.0 31 2.4978433393531356E-4 0.0 0.0 2.8721338099218423 0.0 32 2.7249200065670575E-4 0.0 0.0 2.9806991645168184 0.0 33 2.7249200065670575E-4 0.0 0.0 3.089082857778023 0.0 34 2.951996673780979E-4 0.0 0.0 3.206231710393685 0.0 35 2.951996673780979E-4 0.0 0.0 3.357987047092749 0.0 36 2.951996673780979E-4 0.0 0.0 3.480290540054167 0.0 37 3.4061500082088216E-4 0.0 0.0 3.6094517483654456 0.0 38 3.633226675422743E-4 0.0 0.0 3.7629101600686137 0.0 39 3.633226675422743E-4 0.0 0.0 4.006972161990136 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 21730 0.0 41.552002 1 CTATACG 50 1.0822987E-9 40.5 1 ACGGGTA 525 0.0 39.428574 5 GCCCTAC 3420 0.0 38.75 26 AGGGCGA 3465 0.0 38.506493 6 CGGTCTA 315 0.0 37.857143 31 ACGATAG 155 0.0 37.74194 1 GGGCGAT 6695 0.0 37.5056 7 ACGGGAT 1270 0.0 37.38189 5 TCGTTAG 170 0.0 37.058823 1 TAGACGG 380 0.0 36.710526 2 CGACCCG 1665 0.0 36.62162 32 ACCCGCT 1665 0.0 36.62162 34 CCCTACA 3640 0.0 36.46978 27 TAACGGG 1015 0.0 36.354683 3 TCGTTGA 1215 0.0 36.2963 24 AATCGTT 1210 0.0 36.26033 22 ATTATAC 3600 0.0 36.25 42 TAGGGTA 2100 0.0 36.214287 5 GGACTAA 4120 0.0 36.207523 8 >>END_MODULE