SRR1545226_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545226_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1503395
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5792	0.3852613584586885	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	4448	0.29586369516993205	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3908	0.25994499116998526	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3672	0.24424718719963817	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACG	20	7.033982E-4	45.0	1
TAATACG	50	2.1827873E-11	45.0	1
ACTATCG	100	0.0	45.0	1
ACGCATG	20	7.033982E-4	45.0	1
CCGGCTA	20	7.033982E-4	45.0	14
CGCATCG	20	7.033982E-4	45.0	21
CACGCTA	25	3.8913808E-5	45.0	1
TCTACCG	20	7.033982E-4	45.0	30
CTACGTT	25	3.8913808E-5	45.0	22
TACGATG	20	7.033982E-4	45.0	1
GTATCGC	25	3.8913808E-5	45.0	10
CGTAAGC	20	7.033982E-4	45.0	32
TATAGCG	105	0.0	45.0	1
GCGGATA	20	7.033982E-4	45.0	41
GGTTAAC	425	0.0	45.0	8
GGCTCGA	20	7.033982E-4	45.0	8
ACGGTAC	20	7.033982E-4	45.0	19
ATCGTAC	30	2.1659507E-6	44.999996	28
TATTACG	30	2.1659507E-6	44.999996	1
TCGTAGT	30	2.1659507E-6	44.999996	18