SRR1545223_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545223_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1820136
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6613	0.36332449882865897	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6485	0.3562920572968174	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6271	0.34453469411076976	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3240	0.1780086762747399	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1964	0.1079040247541942	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTACG	20	7.0343725E-4	45.000004	25
TACCCCG	60	0.0	45.000004	6
TTAGCTA	20	7.0343725E-4	45.000004	18
CGACGGT	185	0.0	45.000004	28
TCTTCGA	20	7.0343725E-4	45.000004	25
CGCATTA	20	7.0343725E-4	45.000004	38
GGCCGTA	20	7.0343725E-4	45.000004	8
CCTACGG	40	6.8193913E-9	45.000004	2
TATATCG	30	2.1662036E-6	45.000004	11
CGCGAGG	60	0.0	45.000004	2
ATATCGA	30	2.1662036E-6	45.000004	12
ACGTGTG	20	7.0343725E-4	45.000004	2
GTCCGCG	20	7.0343725E-4	45.000004	40
TCGTACC	20	7.0343725E-4	45.000004	30
ACGTCGT	20	7.0343725E-4	45.000004	29
TAAGCGA	20	7.0343725E-4	45.000004	1
ATACCGG	40	6.8193913E-9	45.000004	2
AAATCGG	95	0.0	45.0	2
CGACGTC	45	3.8562575E-10	45.0	18
TCACACG	25	3.8917067E-5	45.0	15