##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545221_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1933303 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.111710890636388 31.0 31.0 33.0 30.0 34.0 2 31.37514398932811 31.0 31.0 34.0 30.0 34.0 3 31.476504200324523 31.0 31.0 34.0 30.0 34.0 4 35.251076525511 37.0 35.0 37.0 33.0 37.0 5 35.11069449537915 37.0 35.0 37.0 32.0 37.0 6 35.11303091134706 37.0 35.0 37.0 32.0 37.0 7 35.77962947349691 37.0 35.0 37.0 35.0 37.0 8 35.851281459760834 37.0 35.0 37.0 35.0 37.0 9 37.460563088145 39.0 37.0 39.0 35.0 39.0 10 36.66526819644929 39.0 35.0 39.0 32.0 39.0 11 36.362836554849395 38.0 35.0 39.0 32.0 39.0 12 35.61588431818499 37.0 35.0 39.0 31.0 39.0 13 35.282745643078194 37.0 35.0 39.0 30.0 39.0 14 36.08056781580539 38.0 35.0 40.0 30.0 41.0 15 36.454950931126675 38.0 35.0 40.0 31.0 41.0 16 36.34982928180425 38.0 35.0 40.0 31.0 41.0 17 36.419401407849676 38.0 35.0 40.0 31.0 41.0 18 36.472043957931064 38.0 35.0 40.0 31.0 41.0 19 36.40975780826906 38.0 35.0 40.0 31.0 41.0 20 36.2799923240175 38.0 35.0 40.0 31.0 41.0 21 36.16669606367962 38.0 34.0 40.0 30.0 41.0 22 36.065749135029535 38.0 34.0 40.0 30.0 41.0 23 35.97354475734016 37.0 34.0 40.0 30.0 41.0 24 35.79315554778532 37.0 34.0 40.0 30.0 41.0 25 35.73132406042922 37.0 34.0 40.0 30.0 41.0 26 35.586751274890695 37.0 34.0 40.0 29.0 41.0 27 35.55390903546935 37.0 34.0 40.0 29.0 41.0 28 35.55831858741232 37.0 34.0 40.0 29.0 41.0 29 35.5113337123048 37.0 34.0 40.0 29.0 41.0 30 35.42840206630828 36.0 34.0 40.0 29.0 41.0 31 35.33366782133996 37.0 34.0 40.0 29.0 41.0 32 35.18482307222406 37.0 34.0 40.0 28.0 41.0 33 35.02387934017585 36.0 34.0 40.0 27.0 41.0 34 34.855177900204986 36.0 34.0 40.0 26.0 41.0 35 34.6794868678112 36.0 33.0 40.0 26.0 41.0 36 34.48188256057121 36.0 33.0 40.0 24.0 41.0 37 34.3158982321964 36.0 33.0 40.0 24.0 41.0 38 34.35795216787022 36.0 33.0 40.0 24.0 41.0 39 34.339739813159134 36.0 33.0 40.0 24.0 41.0 40 34.174137214911475 35.0 33.0 40.0 23.0 41.0 41 34.133866755495646 35.0 33.0 40.0 23.0 41.0 42 34.05249099597942 35.0 33.0 40.0 23.0 41.0 43 33.91402020273077 35.0 33.0 40.0 23.0 41.0 44 33.85655792185705 35.0 33.0 40.0 23.0 41.0 45 33.80573660724677 35.0 33.0 39.0 23.0 41.0 46 33.7112144345713 35.0 33.0 39.0 23.0 41.0 47 33.73256494196719 35.0 33.0 39.0 23.0 41.0 48 33.697319561393115 35.0 33.0 39.0 23.0 41.0 49 33.647830164231884 35.0 32.0 39.0 24.0 41.0 50 33.435051825813126 35.0 32.0 39.0 23.0 41.0 51 33.26197652411443 35.0 32.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 2.0 12 4.0 13 6.0 14 13.0 15 51.0 16 193.0 17 500.0 18 1117.0 19 2249.0 20 3886.0 21 6237.0 22 9100.0 23 13362.0 24 18458.0 25 25316.0 26 32776.0 27 39375.0 28 45329.0 29 52444.0 30 62685.0 31 77493.0 32 95237.0 33 121434.0 34 187992.0 35 251248.0 36 153177.0 37 183645.0 38 239374.0 39 310437.0 40 161.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.985824777595646 24.25713920683928 27.335239225305084 13.421796790259984 2 32.35302484918298 26.153168954892227 28.351065508096767 13.142740687828033 3 30.458236499917497 25.70698954069797 30.39492516175685 13.439848797627688 4 26.797092850939556 28.351582757591544 29.681172583914677 15.170151807554221 5 23.05220650875729 32.365852636653436 29.09993932663426 15.482001527955008 6 21.124262466876637 41.204612003395226 27.16723658940166 10.503888940326478 7 86.36261362031715 4.9116977524992205 6.784399548337741 1.941289078845892 8 87.1851954918603 4.163651533153365 6.733864272698072 1.91728870228826 9 82.16208219818621 5.842022693804334 8.7391888389973 3.2567062690121515 10 48.33086174283079 24.585902985719258 14.800370143738462 12.282865127711487 11 41.28147527831902 23.16481172377015 21.05376136073859 14.499951637172238 12 37.132565355766786 22.21214160429069 25.401967513628232 15.253325526314294 13 21.90887822550319 35.817820589943736 25.80004272480827 16.473258459744798 14 16.77331489166468 38.27822126174738 28.099320178989018 16.849143667598923 15 15.886852707516619 24.041394442567977 43.54283834453265 16.528914505382758 16 18.59491243741928 19.502426676004745 41.82406999833963 20.07859088823635 17 18.49006596482807 20.594133459680144 29.56556732183212 31.35023325365967 18 21.519441080885922 23.981548676022328 34.14265637616039 20.35635386693136 19 30.40666672528828 24.764560961215082 25.587556632354058 19.241215681142585 20 31.139195459790837 23.423901995703726 26.164444993878348 19.272457550627088 21 23.11520749722108 29.330011901910876 27.708331285887418 19.84644931498063 22 22.58011289487473 24.69555987861189 24.859062443910755 27.865264782602623 23 20.537598089901067 30.189008137886304 26.541571600519937 22.731822171692695 24 19.470357207328597 24.56355780754491 38.211806426618075 17.754278558508418 25 19.66913618817123 26.38634502713749 34.10681098617237 19.83770779851891 26 18.205164943105142 33.56483696554549 26.715315705815385 21.51468238553398 27 18.405392222533145 33.89779046533316 28.544775443890586 19.152041868243106 28 17.50424015273343 28.55320661065544 35.98215075443425 17.960402482176878 29 18.220320353302093 26.086081695419704 34.42776429768122 21.26583365359698 30 20.620202834216883 31.529615378448177 29.426944457232 18.423237330102936 31 29.57156741597153 26.834800339108767 25.365242799499093 18.22838944542061 32 29.932193763729742 25.59122910376697 26.44220797257336 18.034369159929923 33 29.504273256701097 26.52682998991881 24.265622098553617 19.70327465482648 34 20.964690997738067 26.751626620348702 27.211771770901922 25.07191061101131 35 21.99148296981901 25.41132972948369 30.595411065932243 22.001776234765064 36 30.070920078228813 27.12859805214185 24.39565862154044 18.404823248088892 37 20.49797677860118 34.71933783788677 26.875714774145592 17.906970609366457 38 20.911983274220336 33.95680863268717 24.717698156988323 20.41350993610417 39 21.774238182012855 32.24166103295759 25.35562195889625 20.628478826133307 40 25.955838272634967 25.749714348966506 26.71609158005755 21.578355798340972 41 19.03591935666577 24.350761365393836 28.24637421035399 28.366945067586407 42 20.39545792873647 25.905509896793212 25.46843407370702 28.230598100763306 43 20.448062202355246 26.003321776255454 27.04832093055253 26.50029509083677 44 18.95802158275242 28.85936658661369 30.84524257190932 21.337369258724575 45 18.806777830479753 35.838096770138975 24.531177989171898 20.823947410209367 46 20.693290187828808 33.633010448957045 25.673575223335398 20.000124139878746 47 20.93225945441558 27.79388435232346 27.20044400696632 24.073412186294647 48 20.904224531798686 27.336790973789416 31.77215366654891 19.98683082786299 49 21.787272869281225 27.62810588924757 31.2753872517655 19.309233989705703 50 19.87562218648603 34.03946510195246 26.700987894810073 19.383924816751435 51 19.81624194448568 33.112243657616006 25.70579986685998 21.365714531038332 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4577.0 1 4382.0 2 4187.0 3 9587.0 4 14987.0 5 11252.0 6 7517.0 7 7514.5 8 7512.0 9 7913.0 10 8314.0 11 8505.0 12 8696.0 13 8803.5 14 8911.0 15 8763.0 16 8615.0 17 8409.0 18 8203.0 19 8154.0 20 8105.0 21 8392.0 22 8679.0 23 9635.0 24 10591.0 25 11558.5 26 16943.5 27 21361.0 28 24250.5 29 27140.0 30 33127.0 31 39114.0 32 43342.5 33 47571.0 34 58566.0 35 69561.0 36 70798.0 37 72035.0 38 80590.0 39 89145.0 40 109244.0 41 129343.0 42 153520.5 43 177698.0 44 174305.5 45 170913.0 46 160831.0 47 150749.0 48 141688.0 49 132627.0 50 124032.5 51 115438.0 52 104017.5 53 92597.0 54 84426.0 55 76255.0 56 74451.5 57 72648.0 58 70892.0 59 69136.0 60 66028.0 61 62920.0 62 57564.0 63 52208.0 64 46647.5 65 41087.0 66 35580.5 67 30074.0 68 27115.5 69 24157.0 70 21509.5 71 18862.0 72 16126.0 73 13390.0 74 10642.0 75 6022.0 76 4150.0 77 3098.5 78 2047.0 79 1510.5 80 974.0 81 683.5 82 393.0 83 326.5 84 260.0 85 169.5 86 79.0 87 58.0 88 37.0 89 22.0 90 7.0 91 9.0 92 11.0 93 5.5 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1933303.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.396228585937283 #Duplication Level Percentage of deduplicated Percentage of total 1 77.67067790647995 15.06518223098794 2 6.496600675806705 2.52019103479003 3 2.7088440552708515 1.5762407549907227 4 1.5329799596020919 1.189361188564123 5 1.0466882199256855 1.0150901985943197 6 0.7266711043070929 0.8456807307561509 7 0.5818831301353107 0.7900436741683623 8 0.5055194595898641 0.7844136794275591 9 0.4115639525446353 0.7184509651158832 >10 6.137443397856109 28.97967179785212 >50 1.269956568696991 17.067617376634267 >100 0.8993773562158573 27.006407547964656 >500 0.008777089167569236 1.0520982038863602 >1k 0.002742840364865386 0.9678282021187633 >5k 2.7428403648653864E-4 0.4217224141488257 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7927 0.41002367450937593 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3965 0.20508942467890445 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 3252 0.168209535701336 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2014 0.10417404824799836 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.016034734338073234 0.0 2 0.0 0.0 0.0 0.04981112634698234 0.0 3 0.0 0.0 0.0 0.07686327492379622 0.0 4 0.0 0.0 0.0 0.1081051444083002 0.0 5 5.17249494776556E-5 0.0 0.0 0.19795138165098797 0.0 6 5.17249494776556E-5 0.0 0.0 0.30657377555406473 0.0 7 5.17249494776556E-5 0.0 0.0 0.3790404297722602 0.0 8 5.17249494776556E-5 0.0 0.0 0.5575949553691274 0.0 9 5.17249494776556E-5 0.0 0.0 0.6304236842336665 0.0 10 5.17249494776556E-5 0.0 0.0 0.7502186672239168 0.0 11 5.17249494776556E-5 0.0 0.0 0.869134326073047 0.0 12 5.17249494776556E-5 0.0 0.0 0.9668427556363385 0.0 13 5.17249494776556E-5 0.0 0.0 1.0099296385512255 0.0 14 5.17249494776556E-5 0.0 0.0 1.0294299445043018 0.0 15 1.034498989553112E-4 0.0 0.0 1.054154470354621 0.0 16 1.034498989553112E-4 0.0 0.0 1.1180865079090034 0.0 17 1.551748484329668E-4 0.0 0.0 1.1896738379860787 0.0 18 1.551748484329668E-4 0.0 0.0 1.3050204753212507 0.0 19 1.551748484329668E-4 0.0 0.0 1.3516246548006183 0.0 20 1.551748484329668E-4 0.0 0.0 1.4058324018532016 0.0 21 1.551748484329668E-4 0.0 0.0 1.47514383415326 0.0 22 1.551748484329668E-4 0.0 0.0 1.5537657573592965 0.0 23 1.551748484329668E-4 0.0 0.0 1.6389567491489954 0.0 24 1.551748484329668E-4 0.0 0.0 1.715147599729582 0.0 25 2.58624747388278E-4 0.0 0.0 1.781510709909414 0.0 26 3.103496968659336E-4 0.0 0.0 1.8445634233226762 0.0 27 3.103496968659336E-4 0.0 0.0 1.9139265805722123 0.0 28 3.103496968659336E-4 0.0 0.0 1.9870656591336175 0.0 29 3.103496968659336E-4 0.0 0.0 2.071222151933763 0.0 30 3.103496968659336E-4 0.0 0.0 2.1752410253333285 0.0 31 3.103496968659336E-4 0.0 0.0 2.2668459108582564 0.0 32 3.103496968659336E-4 0.0 0.0 2.355554199212436 0.0 33 3.103496968659336E-4 0.0 0.0 2.451866055139831 0.0 34 3.103496968659336E-4 0.0 0.0 2.5582125512658904 0.0 35 3.103496968659336E-4 0.0 0.0 2.6890766734443594 0.0 36 3.103496968659336E-4 0.0 0.0 2.7931472717934023 0.0 37 3.103496968659336E-4 0.0 0.0 2.90042481701006 0.0 38 3.103496968659336E-4 0.0 0.0 3.0187197764654585 0.0 39 3.103496968659336E-4 0.0 0.0 3.2035330209491217 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATCG 50 2.1827873E-11 45.0 21 TCGCTAA 25 3.8917977E-5 45.0 10 TTACGCG 25 3.8917977E-5 45.0 1 TTACGAG 135 0.0 41.666664 1 TCTACGG 60 3.6379788E-12 41.250004 2 TCGATAG 50 1.0822987E-9 40.5 1 CGGTCTA 185 0.0 40.135136 31 GACCGTT 45 1.929402E-8 40.000004 9 GCGATCG 45 1.929402E-8 40.000004 9 TTTACGG 175 0.0 39.857143 2 TCACGAC 205 0.0 39.512196 25 ATAGGGC 805 0.0 39.130432 4 TACGATA 35 6.2505023E-6 38.571426 29 TCTAACG 35 6.2505023E-6 38.571426 1 TCGTAAG 140 0.0 38.571426 1 AGGGATC 1345 0.0 38.475838 6 AGGGTAC 790 0.0 38.449368 6 CGTTTTT 6170 0.0 38.32658 1 ACCCGCT 1155 0.0 38.18182 34 GCGCGAC 1185 0.0 38.16456 9 >>END_MODULE