SRR1545220_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545220_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3201584
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13440	0.4197922028595845	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7225	0.22566954357592992	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5686	0.1775995882038391	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4146	0.12949839829284504	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3981	0.12434469937380997	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3206	0.10013793172379672	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTAC	20	7.035176E-4	45.000004	31
CGTTACA	20	7.035176E-4	45.000004	32
GTCGTAC	20	7.035176E-4	45.000004	41
CTATTCG	20	7.035176E-4	45.000004	9
ACCGTAT	25	3.8923732E-5	45.0	4
ATTACGC	30	2.166722E-6	44.999996	31
ACTACGG	130	0.0	41.53846	2
CGTTAGG	555	0.0	41.351353	2
CGTAAGG	350	0.0	41.14286	2
TACGCGC	285	0.0	41.05263	34
TATTACG	170	0.0	41.029415	1
ACGACGG	270	0.0	40.833332	27
TATACGG	310	0.0	40.64516	2
AGCGGGA	1210	0.0	40.165287	4
GTATGCG	185	0.0	40.135136	1
CGAACGC	45	1.9301297E-8	40.000004	17
CGTATTA	45	1.9301297E-8	40.000004	35
GTATACG	90	0.0	40.000004	1
GCGTATG	180	0.0	40.000004	1
CAAATCG	85	0.0	39.705883	1