SRR1545218_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545218_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	787816
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3214	0.40796328076606725	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2808	0.35642840460208985	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1851	0.23495333935842888	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1804	0.22898747930988964	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	986	0.1251561278268022	No Hit
GTGTATGGGAAGATAATTTTTTGTCTAATTGTTTTATGTTTATGTCTTTCT	808	0.1025620195578663	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATGCCA	30	2.1646283E-6	45.000004	9
TCACATG	30	2.1646283E-6	45.000004	23
GCGCGAC	30	2.1646283E-6	45.000004	9
CGTTGAA	30	2.1646283E-6	45.000004	17
TCTAGCG	30	2.1646283E-6	45.000004	1
ACGCTAG	30	2.1646283E-6	45.000004	1
TCGTAAG	30	2.1646283E-6	45.000004	1
ATCGAAG	30	2.1646283E-6	45.000004	1
GCATAGC	30	2.1646283E-6	45.000004	9
GTTGAGC	25	3.8896847E-5	45.0	13
CGGAATA	20	7.0319336E-4	45.0	45
TAATACG	25	3.8896847E-5	45.0	1
CGGAAAG	20	7.0319336E-4	45.0	15
CATATAG	20	7.0319336E-4	45.0	1
TCCGATA	25	3.8896847E-5	45.0	14
CCTAGGT	20	7.0319336E-4	45.0	37
GGCGTAA	20	7.0319336E-4	45.0	22
TTCACGA	25	3.8896847E-5	45.0	39
ACCTGTT	35	1.2112832E-7	45.0	43
CGACCCG	25	3.8896847E-5	45.0	32