SRR1545217_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545217_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2523290
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22304	0.8839253514261143	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5848	0.23176091531294463	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGTA	20	7.034892E-4	45.0	31
CGTTTTT	15865	0.0	43.0145	1
CGACGGT	285	0.0	42.63158	28
GCGTAAG	80	0.0	42.1875	1
GTTAGCG	150	0.0	42.0	1
ACGGGAT	1555	0.0	40.948555	5
ACGGGAC	830	0.0	40.120483	5
CTAGCGG	230	0.0	40.1087	2
TACGGGA	1170	0.0	39.423077	4
TAAGGGA	4370	0.0	37.6373	4
AGGGCGA	2095	0.0	37.5895	6
GGGCGAT	3975	0.0	37.584908	7
AAGGGAC	3335	0.0	37.57871	5
AACGTCG	30	1.14030845E-4	37.500004	13
AAGGGAT	5415	0.0	37.47922	5
GTAGGGA	3965	0.0	37.45271	4
AGCGGGA	2050	0.0	37.42683	4
CGGGATT	1770	0.0	37.37288	6
TAGGGAC	2805	0.0	37.299465	5
TCACGAC	320	0.0	37.265625	25