SRR1545216_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545216_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1443228
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5984	0.4146261020434748	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3636	0.2519352451587691	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2967	0.20558082298846753	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2722	0.18860498826242283	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1715	0.1188308430823127	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1605	0.1112090397359253	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1595	0.11051614852261736	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCCGT	25	3.891304E-5	45.0	34
ACGTTAG	25	3.891304E-5	45.0	1
TAGACCC	20	7.0338877E-4	45.0	1
CTCGCAC	20	7.0338877E-4	45.0	43
CGTCGAA	25	3.891304E-5	45.0	42
CACCGTT	20	7.0338877E-4	45.0	36
GTGCGAT	25	3.891304E-5	45.0	8
CTCGATG	60	0.0	44.999996	1
TATAGCG	60	0.0	44.999996	1
CGGTCTA	60	0.0	44.999996	31
TCACGAC	70	0.0	41.785713	25
GCGATAC	65	0.0	41.538464	9
CGTTAGG	195	0.0	41.53846	2
ACGGGTA	120	0.0	41.249996	5
TATACCC	55	6.184564E-11	40.909092	15
CTACGAA	320	0.0	40.78125	11
TACGAAT	320	0.0	40.78125	12
CGAATAT	320	0.0	40.78125	14
GCTACGA	320	0.0	40.78125	10
ACGGGAT	255	0.0	40.588234	5