SRR1545215_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545215_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	150266
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	582	0.387313164654679	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	329	0.2189450707412189	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	204	0.1357592535902999	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	196	0.13043536129264105	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	170	0.11313271132524988	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGGGC	45	3.8016879E-10	45.000004	4
AACGGGA	45	3.8016879E-10	45.000004	4
TAGGGTA	45	3.8016879E-10	45.000004	5
GAACGGG	30	2.1528795E-6	45.000004	3
TGATCCT	50	2.1827873E-11	45.0	18
GTGTTAG	20	7.0137036E-4	45.0	1
ATGGGTA	25	3.8745828E-5	45.0	5
CATATGC	50	2.1827873E-11	45.0	33
TTAGCGG	25	3.8745828E-5	45.0	2
GACGTTC	20	7.0137036E-4	45.0	12
ACCTGGT	50	2.1827873E-11	45.0	11
AGGGTGC	25	3.8745828E-5	45.0	6
CGACAAT	25	3.8745828E-5	45.0	20
GCTTGAG	25	3.8745828E-5	45.0	1
GTAATTT	25	3.8745828E-5	45.0	9
CTACGGG	25	3.8745828E-5	45.0	3
CGGGACT	25	3.8745828E-5	45.0	6
CTACCTT	20	7.0137036E-4	45.0	17
AATTCGC	20	7.0137036E-4	45.0	13
GCGATGA	40	6.7466317E-9	45.0	9