SRR1545214_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545214_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	55288
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	227	0.41057734047171174	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	151	0.2731153233974823	No Hit
TGTAGCGGGGTTAAAGACAGCGAGAAAAATTTTTGCTGGAAAAACACGGAG	119	0.21523657936622775	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	83	0.15012299233106643	No Hit
ACACCAGGGTCCAGAAAGCTGTGCAGTCCTAGGAGAATTAACACTGCAATC	80	0.1446968600781363	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	62	0.11214006656055564	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	58	0.10490522355664882	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCACA	45	3.7107384E-10	45.000004	45
AGGGCGA	45	3.7107384E-10	45.000004	6
TGATACG	35	1.18408934E-7	45.000004	12
ATACGGC	35	1.18408934E-7	45.000004	14
TGGGCGA	35	1.18408934E-7	45.000004	6
TTCATTA	25	3.8426377E-5	45.0	16
ATGGGCG	20	6.975075E-4	45.0	5
GTTGAGG	20	6.975075E-4	45.0	2
CAATGGG	20	6.975075E-4	45.0	3
CACATCC	20	6.975075E-4	45.0	45
TCTAGGG	20	6.975075E-4	45.0	3
GCGATGT	20	6.975075E-4	45.0	9
CAACCTC	20	6.975075E-4	45.0	27
TCAGGGA	25	3.8426377E-5	45.0	4
TATGTTC	25	3.8426377E-5	45.0	12
AGGATAG	20	6.975075E-4	45.0	1
TAAGCAG	20	6.975075E-4	45.0	1
AGCTAGG	25	3.8426377E-5	45.0	2
GGCGATA	20	6.975075E-4	45.0	8
GTTCATT	25	3.8426377E-5	45.0	15