SRR1545213_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545213_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1624966
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5620	0.34585339016324035	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5407	0.33274542359655523	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3770	0.23200485425541212	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2371	0.14591074520943823	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAG	60	0.0	45.000004	1
ACACGTG	20	7.0341484E-4	45.000004	14
ACCGGAT	20	7.0341484E-4	45.000004	15
ACACCGC	20	7.0341484E-4	45.000004	31
TGGAACG	65	0.0	45.000004	1
TTGTACG	40	6.8175723E-9	45.000004	1
CACGACA	60	0.0	45.000004	14
TCTAGCG	40	6.8175723E-9	45.000004	1
TGCGCAT	20	7.0341484E-4	45.000004	1
TACGATG	30	2.166058E-6	45.000004	1
CGTACTG	20	7.0341484E-4	45.000004	11
AGACACG	20	7.0341484E-4	45.000004	22
CATACGT	20	7.0341484E-4	45.000004	21
ACGCTAT	40	6.8175723E-9	45.000004	35
TCCGTCG	30	2.166058E-6	45.000004	2
CAAGCCG	20	7.0341484E-4	45.000004	45
GTTCACG	75	0.0	45.000004	1
TTAGTCA	20	7.0341484E-4	45.000004	44
CGTAAGA	20	7.0341484E-4	45.000004	22
AACCTCG	30	2.166058E-6	45.000004	22