SRR1545212_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545212_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1230380
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5898	0.47936409889627596	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3401	0.27641866740356635	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1603	0.13028495261626488	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1407	0.11435491474178709	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1237	0.10053804515678083	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTACG	25	3.8909668E-5	45.0	1
GGTCGTA	20	7.03348E-4	45.0	8
ATTCGAC	20	7.03348E-4	45.0	14
ATTCGAA	25	3.8909668E-5	45.0	25
CCCGTAG	25	3.8909668E-5	45.0	21
TACGCGC	20	7.03348E-4	45.0	34
TGCGCAC	20	7.03348E-4	45.0	1
CGGATCG	20	7.03348E-4	45.0	30
GTATACG	40	6.8157533E-9	45.0	1
TTACGCG	25	3.8909668E-5	45.0	1
TCGAGGT	25	3.8909668E-5	45.0	3
GTGCGCT	20	7.03348E-4	45.0	9
AATCGAC	20	7.03348E-4	45.0	43
CGTATGA	30	2.165627E-6	44.999996	15
ATCTACG	30	2.165627E-6	44.999996	1
ACGTTAG	65	0.0	44.999996	1
GCCACGA	30	2.165627E-6	44.999996	43
TCGATAG	105	0.0	42.857147	1
TATACGG	160	0.0	42.1875	2
TACGGGT	75	0.0	42.000004	4