##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545212_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1230380 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.33989580454819 31.0 31.0 34.0 30.0 34.0 2 31.58695768786879 31.0 31.0 34.0 30.0 34.0 3 31.65891025536826 31.0 31.0 34.0 30.0 34.0 4 35.41862920398576 37.0 35.0 37.0 33.0 37.0 5 35.29091418911231 37.0 35.0 37.0 33.0 37.0 6 35.278142525073555 37.0 35.0 37.0 32.0 37.0 7 35.89035013573042 37.0 35.0 37.0 35.0 37.0 8 35.99519091662739 37.0 35.0 37.0 35.0 37.0 9 37.659292251174435 39.0 37.0 39.0 35.0 39.0 10 36.945760659308505 39.0 37.0 39.0 32.0 39.0 11 36.56304068661714 39.0 35.0 39.0 32.0 39.0 12 35.54315983679839 37.0 35.0 39.0 31.0 39.0 13 35.019941806596336 37.0 34.0 39.0 30.0 39.0 14 35.79868333360425 38.0 34.0 40.0 29.0 41.0 15 36.27838716494091 38.0 35.0 40.0 31.0 41.0 16 36.233969180253254 37.0 35.0 40.0 31.0 41.0 17 36.33393910824298 37.0 35.0 40.0 31.0 41.0 18 36.411126643801104 37.0 35.0 40.0 31.0 41.0 19 36.32749150668899 37.0 35.0 40.0 31.0 41.0 20 36.18192103252654 36.0 35.0 40.0 31.0 41.0 21 36.04907345698077 36.0 34.0 40.0 31.0 41.0 22 35.94624912628619 36.0 34.0 40.0 30.0 41.0 23 35.904724556641035 36.0 34.0 40.0 31.0 41.0 24 35.70847217932671 36.0 34.0 40.0 30.0 41.0 25 35.66771485232205 35.0 34.0 40.0 30.0 41.0 26 35.50290885742616 35.0 34.0 40.0 30.0 41.0 27 35.46491002779629 35.0 34.0 40.0 30.0 41.0 28 35.54423836538305 36.0 34.0 40.0 30.0 41.0 29 35.56678180724654 36.0 34.0 40.0 30.0 41.0 30 35.502381378110826 36.0 34.0 40.0 30.0 41.0 31 35.34712609112632 36.0 34.0 40.0 30.0 41.0 32 35.18174872803524 35.0 34.0 40.0 29.0 41.0 33 35.00847543035485 35.0 34.0 40.0 29.0 41.0 34 34.873286301792945 35.0 34.0 40.0 27.0 41.0 35 34.687898047757606 35.0 34.0 40.0 27.0 41.0 36 34.46023504933435 35.0 33.0 40.0 25.0 41.0 37 34.27496383231197 35.0 33.0 40.0 25.0 41.0 38 34.36015133535981 35.0 33.0 40.0 26.0 41.0 39 34.371166631447196 35.0 33.0 40.0 26.0 41.0 40 34.18945366472147 35.0 33.0 40.0 24.0 41.0 41 34.23784034200816 35.0 33.0 40.0 25.0 41.0 42 34.173307433475834 35.0 33.0 40.0 25.0 41.0 43 34.039084673027844 35.0 33.0 40.0 24.0 41.0 44 33.98536712235244 35.0 33.0 39.0 24.0 41.0 45 33.90126952648775 35.0 33.0 39.0 24.0 41.0 46 33.843411791479056 35.0 33.0 39.0 23.0 41.0 47 33.897458508753395 35.0 33.0 39.0 24.0 41.0 48 33.87030998553293 35.0 33.0 39.0 24.0 41.0 49 33.859731139973015 35.0 33.0 39.0 24.0 41.0 50 33.637694045741966 35.0 33.0 39.0 24.0 41.0 51 33.46919488288171 35.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 3.0 14 12.0 15 29.0 16 90.0 17 263.0 18 585.0 19 1128.0 20 2087.0 21 3337.0 22 5021.0 23 7703.0 24 10674.0 25 14932.0 26 19625.0 27 23237.0 28 26373.0 29 30660.0 30 37482.0 31 46762.0 32 58870.0 33 78924.0 34 135673.0 35 201597.0 36 86953.0 37 101730.0 38 139116.0 39 197374.0 40 138.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.45509517384873 24.0019343617419 29.08898064012744 14.45398982428193 2 31.0262683073522 26.652335050959863 29.479754222272792 12.84164241941514 3 29.331751166306347 25.9097189486175 31.883239324436353 12.875290560639801 4 26.39802337489231 27.828150652643895 30.565028690323317 15.208797282140477 5 23.15674832165672 33.00045514393927 29.514377671938753 14.328418862465256 6 21.457842292625042 41.26359336140054 26.780831938100423 10.49773240787399 7 86.1035615013248 5.472536939807214 6.729465693525577 1.6944358653424145 8 88.10099318909606 4.109218290284303 6.180529592483623 1.6092589281360232 9 83.89879549407499 5.792519384255271 7.61919081909654 2.6894943025731886 10 54.865569986508234 21.781482143727953 12.91600968806385 10.436938181699963 11 49.705131747915274 19.894585412636747 18.72454038589704 11.675742453550935 12 44.8501276028544 21.57089679611177 21.88299549732603 11.695980103707798 13 20.429948471204018 43.663502332612694 22.35252523610592 13.554023960077375 14 14.063378793543457 45.757895934589314 26.175490498870268 14.003234772996962 15 13.348640257481428 23.198280206115186 50.46384043953901 12.989239096864383 16 14.873453729742032 17.819860530892896 48.84710414668639 18.459581592678685 17 14.646613241437606 18.54093857182334 29.46049188055723 37.35195630618183 18 19.315008371397454 23.126920138493798 38.297111461499696 19.26096002860905 19 32.747525154830214 22.602366748484208 25.901347551163056 18.748760545522522 20 34.07085615826005 22.225166208813537 25.449373364326465 18.254604268599945 21 21.393634486906485 30.725060550399064 27.821648596368604 20.05965636632585 22 21.49587932183553 25.710756026593412 22.862205172385767 29.931159479185293 23 18.46120710674751 32.801004567694534 24.808189339878737 23.92959898567922 24 17.168029389294365 22.95559095563972 43.46437685918171 16.4120027958842 25 16.362912271005705 26.316341292933892 39.1600968806385 18.1606495554219 26 14.859636860157025 38.24517628700077 27.15104276727515 19.74414408556706 27 16.189551195565596 39.635722297176486 27.580828687072284 16.59389782018563 28 14.270225458801347 30.234642955834783 39.65791056421593 15.837221021147938 29 14.619304605081357 26.156715811375346 38.12114956354947 21.102830019993824 30 18.104650595750908 35.11598042881061 29.573383832637074 17.20598514280141 31 31.411677693070434 28.27500447016369 23.63871324306312 16.674604593702757 32 33.529478697638126 24.80445065752044 26.10730018368309 15.55877046115834 33 31.08104813147158 26.98613436499293 23.304832653326617 18.62798485020888 34 19.699605000081274 26.710040800403128 26.92371462475008 26.666639574765522 35 21.059510070059655 24.79916773679676 32.13186170126303 22.009460491880557 36 33.23607340821535 26.736536679724964 23.602951933548987 16.424437978510703 37 19.76356897868951 38.04418147239064 26.71507989401648 15.477169654903363 38 19.544774785025766 37.680879078008424 23.246720525366147 19.52762561159967 39 20.88200393374405 35.58705440595588 25.44660999040947 18.084331669890602 40 26.470683853768755 25.572587330743346 25.412311643557274 22.544417171930622 41 16.254246655504804 24.957899185617453 27.219070531055443 31.5687836278223 42 19.394008355142315 24.830215055511307 24.75747330093142 31.018303288414963 43 19.893772655602334 25.09297940473675 27.32521659974967 27.688031339911245 44 17.230124026723452 30.005120369316796 31.66078772411775 21.103967879842 45 15.762609925388904 42.66576179716836 21.911279442123572 19.66034883531917 46 20.10850306409402 37.8739088736813 23.925372649100275 18.0922154131244 47 20.641265300151172 28.512492075618916 26.08600594938149 24.76023667484842 48 21.003998764609307 25.39109868495912 34.43001349176677 19.174889058664803 49 20.68661714267137 26.077309449113283 34.50941985402884 18.726653554186512 50 18.98494773972269 38.091971586014076 25.247078138461287 17.676002535801945 51 17.983305970513175 36.34373120499358 24.35759684000065 21.315365984492594 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3855.0 1 3576.5 2 3298.0 3 6735.0 4 10172.0 5 7491.5 6 4811.0 7 5020.5 8 5230.0 9 5680.5 10 6131.0 11 6146.0 12 6161.0 13 6207.0 14 6253.0 15 5965.5 16 5678.0 17 5605.0 18 5532.0 19 5256.5 20 4981.0 21 5122.5 22 5264.0 23 5219.5 24 5175.0 25 6589.0 26 10727.0 27 13451.0 28 14987.0 29 16523.0 30 19779.0 31 23035.0 32 25218.0 33 27401.0 34 30856.0 35 34311.0 36 37207.5 37 40104.0 38 49443.5 39 58783.0 40 79513.0 41 100243.0 42 120944.0 43 141645.0 44 139558.0 45 137471.0 46 125009.5 47 112548.0 48 98111.0 49 83674.0 50 79088.5 51 74503.0 52 65588.0 53 56673.0 54 50345.5 55 44018.0 56 40810.0 57 37602.0 58 35292.0 59 32982.0 60 32390.0 61 31798.0 62 28363.0 63 24928.0 64 21977.5 65 19027.0 66 15480.5 67 11934.0 68 10612.0 69 9290.0 70 7995.5 71 6701.0 72 5780.5 73 4860.0 74 3977.5 75 2394.0 76 1693.0 77 1221.5 78 750.0 79 583.0 80 416.0 81 279.5 82 143.0 83 160.5 84 178.0 85 106.5 86 35.0 87 25.0 88 15.0 89 8.5 90 2.0 91 2.0 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1230380.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.41763205569915 #Duplication Level Percentage of deduplicated Percentage of total 1 78.43373788704834 14.445637251568064 2 7.120493192229812 2.6228524733919873 3 2.5665902745613858 1.4181154594382237 4 1.3287108803617167 0.9788683241162477 5 0.8488692054883 0.781708034504859 6 0.5984661231409394 0.6613397312286337 7 0.47629756401491985 0.6140591298136824 8 0.39753303475613955 0.5857293731299232 9 0.3385682675638477 0.5612063199953804 >10 5.349300217739877 24.48404130716982 >50 1.41837918740572 18.321513674163445 >100 1.1134981942629965 32.49013638821811 >500 0.006370647617360829 0.7181571406367296 >1k 0.0027302775502974982 0.8223314113581037 >5k 4.550462583829163E-4 0.49430398126682595 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5898 0.47936409889627596 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3401 0.27641866740356635 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1603 0.13028495261626488 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1407 0.11435491474178709 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1237 0.10053804515678083 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.127570344121329E-5 0.0 0.0 0.017718103350184495 0.0 2 8.127570344121329E-5 0.0 0.0 0.06315122157382272 0.0 3 8.127570344121329E-5 0.0 0.0 0.09102878785415888 0.0 4 8.127570344121329E-5 0.0 0.0 0.126139891740763 0.0 5 8.127570344121329E-5 0.0 0.0 0.21765633381556918 0.0 6 8.127570344121329E-5 0.0 0.0 0.3106357385523172 0.0 7 8.127570344121329E-5 0.0 0.0 0.3813456005461727 0.0 8 8.127570344121329E-5 0.0 0.0 0.5600708724134007 0.0 9 8.127570344121329E-5 0.0 0.0 0.6543506884052082 0.0 10 8.127570344121329E-5 0.0 0.0 0.8266551797005803 0.0 11 8.127570344121329E-5 0.0 0.0 1.007981274077927 0.0 12 8.127570344121329E-5 0.0 0.0 1.1606170451405258 0.0 13 8.127570344121329E-5 0.0 0.0 1.2204359628732586 0.0 14 8.127570344121329E-5 0.0 0.0 1.2478258749329476 0.0 15 8.127570344121329E-5 0.0 0.0 1.287244591101936 0.0 16 8.127570344121329E-5 0.0 0.0 1.3674637103984135 0.0 17 8.127570344121329E-5 0.0 0.0 1.4589801524732195 0.0 18 8.127570344121329E-5 0.0 0.0 1.6116159235358183 0.0 19 8.127570344121329E-5 0.0 0.0 1.6752547993302882 0.0 20 8.127570344121329E-5 0.0 0.0 1.743445114517466 0.0 21 8.127570344121329E-5 0.0 0.0 1.8343926266681838 0.0 22 8.127570344121329E-5 0.0 0.0 1.921357629350282 0.0 23 8.127570344121329E-5 0.0 0.0 2.035387441278304 0.0 24 8.127570344121329E-5 0.0 0.0 2.121783514036314 0.0 25 1.6255140688242658E-4 0.0 0.0 2.1898112778166094 0.0 26 1.6255140688242658E-4 0.0 0.0 2.2599522098863765 0.0 27 1.6255140688242658E-4 0.0 0.0 2.3280612493701134 0.0 28 2.4382711032363985E-4 0.0 0.0 2.402997447942912 0.0 29 2.4382711032363985E-4 0.0 0.0 2.484679529901331 0.0 30 2.4382711032363985E-4 0.0 0.0 2.5910694257058795 0.0 31 2.4382711032363985E-4 0.0 0.0 2.694127017669338 0.0 32 2.4382711032363985E-4 0.0 0.0 2.785155805523497 0.0 33 2.4382711032363985E-4 0.0 0.0 2.8772411775223916 0.0 34 2.4382711032363985E-4 0.0 0.0 2.97225247484517 0.0 35 2.4382711032363985E-4 0.0 0.0 3.1090394837367317 0.0 36 2.4382711032363985E-4 0.0 0.0 3.223069295664754 0.0 37 2.4382711032363985E-4 0.0 0.0 3.3345795607860986 0.0 38 2.4382711032363985E-4 0.0 0.0 3.439587769632146 0.0 39 2.4382711032363985E-4 0.0 0.0 3.554917992815228 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGTACG 25 3.8909668E-5 45.0 1 GGTCGTA 20 7.03348E-4 45.0 8 ATTCGAC 20 7.03348E-4 45.0 14 ATTCGAA 25 3.8909668E-5 45.0 25 CCCGTAG 25 3.8909668E-5 45.0 21 TACGCGC 20 7.03348E-4 45.0 34 TGCGCAC 20 7.03348E-4 45.0 1 CGGATCG 20 7.03348E-4 45.0 30 GTATACG 40 6.8157533E-9 45.0 1 TTACGCG 25 3.8909668E-5 45.0 1 TCGAGGT 25 3.8909668E-5 45.0 3 GTGCGCT 20 7.03348E-4 45.0 9 AATCGAC 20 7.03348E-4 45.0 43 CGTATGA 30 2.165627E-6 44.999996 15 ATCTACG 30 2.165627E-6 44.999996 1 ACGTTAG 65 0.0 44.999996 1 GCCACGA 30 2.165627E-6 44.999996 43 TCGATAG 105 0.0 42.857147 1 TATACGG 160 0.0 42.1875 2 TACGGGT 75 0.0 42.000004 4 >>END_MODULE