SRR1545208_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545208_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3570194
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19127	0.5357411950162932	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11709	0.3279653710694713	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5180	0.14509015476469905	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4667	0.1307211877001642	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4167	0.11671634650666043	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATAGCG	55	1.8189894E-12	45.0	1
TATACGA	55	1.8189894E-12	45.0	1
TTCGCAT	25	3.8924634E-5	45.0	1
CGACGGT	340	0.0	43.014706	28
CTCGCTA	75	0.0	42.0	14
GTATGCG	215	0.0	41.860466	1
TAATACG	70	0.0	41.785713	1
TCTAGCG	135	0.0	41.666668	1
TACGGGA	720	0.0	41.562504	4
CAACCGT	65	0.0	41.53846	28
AGTACGG	245	0.0	41.32653	2
ACGTATA	60	3.6379788E-12	41.249996	13
TCGTAAG	285	0.0	41.05263	1
ATGGGAC	1665	0.0	40.81081	5
CGTAAGG	580	0.0	40.732758	2
AGGGATC	2020	0.0	40.65594	6
CGGTCTA	385	0.0	40.324677	31
GCGTTAG	280	0.0	40.17857	1
TAACGCA	45	1.9303116E-8	40.000004	25
CGTAGGT	45	1.9303116E-8	40.000004	24