SRR1545207_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545207_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	439106
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2824	0.643124894672357	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1386	0.3156413257846625	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	556	0.1266209070247275	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGTA	20	7.0285203E-4	45.0	5
ATCGTAA	25	3.8868544E-5	45.0	14
AGTGCGT	20	7.0285203E-4	45.0	24
AAGCACG	25	3.8868544E-5	45.0	1
GTCGTTT	25	3.8868544E-5	45.0	9
GCGATAT	40	6.7993824E-9	45.0	9
CGTACAT	25	3.8868544E-5	45.0	35
GTGCGAG	35	1.209628E-7	45.0	1
TGCGTAT	20	7.0285203E-4	45.0	26
TGCGTAG	25	3.8868544E-5	45.0	1
TACGGGA	110	0.0	42.954544	4
ATTGCGG	70	0.0	41.785713	2
CGTTTTT	1965	0.0	41.33588	1
GACCGAT	120	0.0	41.249996	9
TGGGCGA	205	0.0	40.609756	6
CACGGGA	100	0.0	40.5	4
ACGGGCT	150	0.0	40.5	5
CACCCAT	140	0.0	40.17857	31
TCGTCCC	185	0.0	40.135136	38
ACGCTAG	45	1.9235813E-8	40.0	1