Basic Statistics
Measure | Value |
---|---|
Filename | SRR1545202_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 3428857 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16727 | 0.48783020114282977 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 10175 | 0.29674611685468366 | No Hit |
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT | 7645 | 0.22296059590703257 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC | 5602 | 0.1633780586358661 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAAACG | 30 | 2.1667656E-6 | 45.000004 | 43 |
AATGCGT | 20 | 7.035245E-4 | 45.000004 | 31 |
ATATACG | 95 | 0.0 | 45.0 | 1 |
ATGTACG | 100 | 0.0 | 42.75 | 1 |
TCGATAG | 75 | 0.0 | 42.0 | 1 |
TCTAGCG | 75 | 0.0 | 42.0 | 1 |
ACCGTAA | 45 | 1.9303116E-8 | 40.000004 | 24 |
TACCGTA | 45 | 1.9303116E-8 | 40.000004 | 23 |
GCTACGA | 1055 | 0.0 | 39.88152 | 10 |
CTAAGCG | 125 | 0.0 | 39.6 | 1 |
CGACGGT | 340 | 0.0 | 39.044117 | 28 |
CGTTTTT | 12230 | 0.0 | 39.02085 | 1 |
TGTTACG | 150 | 0.0 | 39.0 | 1 |
TAAGGGA | 2640 | 0.0 | 38.948864 | 4 |
GGACTAA | 4375 | 0.0 | 38.77714 | 8 |
CGTTAGG | 640 | 0.0 | 38.67188 | 2 |
ACGTTAG | 140 | 0.0 | 38.57143 | 1 |
TAATCCG | 35 | 6.251914E-6 | 38.57143 | 23 |
AACGGGA | 855 | 0.0 | 38.421055 | 4 |
TAGGGTA | 1635 | 0.0 | 38.394497 | 5 |