SRR1545201_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545201_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2001202
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11220	0.5606630415120513	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10719	0.5356280875194008	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2883	0.14406341788585061	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2778	0.13881657124068433	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2422	0.12102726261516829	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2296	0.11473104664096877	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAGAT	30	2.1663109E-6	45.000004	15
CTAAGCG	45	3.8562575E-10	45.0	1
TACGCTA	20	7.034541E-4	45.0	37
CCCGTAT	40	6.8193913E-9	45.0	45
TATTCCG	25	3.8918457E-5	45.0	1
ACTACGT	25	3.8918457E-5	45.0	41
CGTAATC	25	3.8918457E-5	45.0	29
TTACGTA	25	3.8918457E-5	45.0	15
CGCGTAA	25	3.8918457E-5	45.0	31
TAATGCG	25	3.8918457E-5	45.0	1
TAGTCGA	25	3.8918457E-5	45.0	15
AATCGTC	20	7.034541E-4	45.0	30
AATCGGC	20	7.034541E-4	45.0	19
AATACGG	100	0.0	42.75	2
GTATGCG	130	0.0	41.538464	1
TCGTATA	60	3.6379788E-12	41.250004	29
TATCGTG	60	3.6379788E-12	41.250004	1
AAGCCGT	55	6.184564E-11	40.909092	38
TACGGGA	370	0.0	40.743244	4
CTATACG	50	1.0822987E-9	40.5	1