SRR1545200_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545200_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1282848
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5929	0.46217478610092544	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2945	0.22956733767367604	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGTT	20	7.0335926E-4	45.000004	19
CGTGCCT	20	7.0335926E-4	45.000004	40
TTTCGCG	20	7.0335926E-4	45.000004	42
ACCGAAA	20	7.0335926E-4	45.000004	21
TTCGTAA	20	7.0335926E-4	45.000004	1
CTAGTTC	20	7.0335926E-4	45.000004	17
TACGATG	20	7.0335926E-4	45.000004	1
ACCAACG	20	7.0335926E-4	45.000004	1
TCGCGAC	20	7.0335926E-4	45.000004	25
GTACGTA	40	6.8157533E-9	45.000004	11
GTACGAT	20	7.0335926E-4	45.000004	14
GCTTTAC	20	7.0335926E-4	45.000004	37
TATCCGT	20	7.0335926E-4	45.000004	32
AGCACGT	20	7.0335926E-4	45.000004	36
CCTTACG	25	3.89106E-5	45.0	40
GTACCGG	25	3.89106E-5	45.0	22
GATGTAC	35	1.2120836E-7	45.0	9
CACGGTC	25	3.89106E-5	45.0	40
GTCGAAG	25	3.89106E-5	45.0	1
GTTTCGA	45	3.8562575E-10	45.0	17