SRR1545199_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545199_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1122902
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4917	0.43788327031210206	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2770	0.24668225722280307	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTGC	20	7.033216E-4	45.000004	40
CGTTGAT	60	0.0	45.000004	25
TAACGTG	30	2.165456E-6	45.000004	38
TAACGCG	30	2.165456E-6	45.000004	1
ACGGGTA	75	0.0	45.000004	5
CTAACGT	30	2.165456E-6	45.000004	37
CCCGTCG	30	2.165456E-6	45.000004	19
GTAGCAC	20	7.033216E-4	45.000004	9
CTAGTCG	40	6.8139343E-9	45.000004	30
GTATGCG	40	6.8139343E-9	45.000004	1
TATTACG	20	7.033216E-4	45.000004	1
CGTACTC	20	7.033216E-4	45.000004	37
TCCCGTA	20	7.033216E-4	45.000004	24
GAGCCGT	20	7.033216E-4	45.000004	18
CCGAATT	20	7.033216E-4	45.000004	24
CCGAATA	20	7.033216E-4	45.000004	36
CGCACTC	20	7.033216E-4	45.000004	31
TCATACC	20	7.033216E-4	45.000004	38
CGGTCAT	30	2.165456E-6	45.000004	28
CGCAAGT	30	2.165456E-6	45.000004	16