SRR1545198_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545198_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1296540
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4467	0.34453237077143783	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1822	0.14052786647538834	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1685	0.12996128156478012	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAC	20	7.0336205E-4	45.000004	39
GGTACGA	20	7.0336205E-4	45.000004	35
TACGGAT	20	7.0336205E-4	45.000004	33
CGTAGTA	20	7.0336205E-4	45.000004	17
ACTACGT	20	7.0336205E-4	45.000004	34
CGTACAA	35	1.2120836E-7	45.000004	45
CGAGAGT	20	7.0336205E-4	45.000004	21
CACCGTA	20	7.0336205E-4	45.000004	14
TCGACGA	20	7.0336205E-4	45.000004	35
GCCCGTT	20	7.0336205E-4	45.000004	34
GTACGTA	20	7.0336205E-4	45.000004	12
GTCGTAA	25	3.891084E-5	45.0	31
TATAGCG	25	3.891084E-5	45.0	1
CGACTAT	25	3.891084E-5	45.0	32
GCTCGAT	25	3.891084E-5	45.0	11
ACGTTAT	30	2.165718E-6	44.999996	44
CAATTCG	30	2.165718E-6	44.999996	27
CGTCAAG	30	2.165718E-6	44.999996	28
TACGTAC	30	2.165718E-6	44.999996	37
TTAACGG	95	0.0	42.63158	2