SRR1545197_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545197_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	944734
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4149	0.43917123761820787	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2701	0.28590058153935394	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGA	20	7.0326467E-4	45.000004	42
CCCTGCG	35	1.2116288E-7	45.000004	16
TGATCCC	20	7.0326467E-4	45.000004	24
AAATCGT	20	7.0326467E-4	45.000004	12
GTCGAAG	20	7.0326467E-4	45.000004	1
CTCCGAT	20	7.0326467E-4	45.000004	41
GCGCGAA	35	1.2116288E-7	45.000004	30
CGCATCC	20	7.0326467E-4	45.000004	27
GAGTACG	20	7.0326467E-4	45.000004	1
CGCGAAA	35	1.2116288E-7	45.000004	31
GACCCGT	40	6.8121153E-9	45.000004	27
TCAGGCG	40	6.8121153E-9	45.000004	20
ATCCGGC	20	7.0326467E-4	45.000004	21
ACCTACG	20	7.0326467E-4	45.000004	16
CCATCGG	20	7.0326467E-4	45.000004	15
CGTAGTG	20	7.0326467E-4	45.000004	21
CACTAGT	20	7.0326467E-4	45.000004	41
CGAGGTA	20	7.0326467E-4	45.000004	2
AGGCACG	20	7.0326467E-4	45.000004	1
CGCTAAT	20	7.0326467E-4	45.000004	24