Basic Statistics
Measure | Value |
---|---|
Filename | SRR1545194_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 1188389 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5048 | 0.42477673556386 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC | 1392 | 0.11713336289716583 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTTAACG | 25 | 3.890885E-5 | 45.000004 | 21 |
CTATACG | 30 | 2.1655633E-6 | 45.000004 | 1 |
TAGAACG | 35 | 1.2119744E-7 | 45.000004 | 1 |
ACTTCGC | 25 | 3.890885E-5 | 45.000004 | 11 |
TAACGCG | 25 | 3.890885E-5 | 45.000004 | 1 |
TATGCGT | 30 | 2.1655633E-6 | 45.000004 | 20 |
TCGATAG | 45 | 3.8562575E-10 | 45.000004 | 1 |
CCGCTAA | 25 | 3.890885E-5 | 45.000004 | 31 |
TGTTACG | 35 | 1.2119744E-7 | 45.000004 | 1 |
ACTCGAT | 25 | 3.890885E-5 | 45.000004 | 19 |
CGGTCCA | 30 | 2.1655633E-6 | 45.000004 | 24 |
TATCGTC | 25 | 3.890885E-5 | 45.000004 | 14 |
ATCGCGA | 30 | 2.1655633E-6 | 45.000004 | 27 |
TACACGG | 65 | 0.0 | 45.000004 | 2 |
TACGTAA | 25 | 3.890885E-5 | 45.000004 | 39 |
AATCACG | 20 | 7.033383E-4 | 45.0 | 1 |
ACGCATT | 20 | 7.033383E-4 | 45.0 | 40 |
AGTATCG | 20 | 7.033383E-4 | 45.0 | 1 |
TTATACG | 40 | 6.8157533E-9 | 45.0 | 36 |
ACGATTT | 20 | 7.033383E-4 | 45.0 | 37 |