SRR1545190_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545190_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1730441
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6097	0.35233793004211067	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3695	0.21352938355020484	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCCGAT	30	2.16614E-6	45.000004	43
CTATACG	20	7.034277E-4	45.0	1
ACTTACG	35	1.212411E-7	45.0	1
TACGAAC	100	0.0	45.0	34
CATACGT	20	7.034277E-4	45.0	23
CGTAAGA	20	7.034277E-4	45.0	21
CAATCGT	35	1.212411E-7	45.0	17
TACGTAA	20	7.034277E-4	45.0	32
TATCCGT	20	7.034277E-4	45.0	16
TATCCGC	20	7.034277E-4	45.0	29
CGGGTAT	170	0.0	43.676468	6
CGACGGT	550	0.0	42.545452	28
CGTTTTT	5110	0.0	42.181995	1
CACGCAT	75	0.0	42.0	32
ATGACGT	70	0.0	41.785713	40
ACGTAGG	330	0.0	41.590908	2
TCTCACG	575	0.0	41.086956	23
CGTTAGG	155	0.0	40.64516	2
CTCACGA	590	0.0	40.42373	24
TCGTACA	45	1.9292202E-8	40.0	34