SRR1545189_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545189_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1487756
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6516	0.43797504429489775	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3370	0.22651563831703586	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCGT	30	2.1659343E-6	45.000004	24
CCAATCG	30	2.1659343E-6	45.000004	24
GCGATAC	45	3.8562575E-10	45.000004	9
TCGTAAG	120	0.0	45.000004	1
ACGTAAG	30	2.1659343E-6	45.000004	1
TCACGCA	20	7.033957E-4	45.0	19
TCGTTAC	25	3.891362E-5	45.0	1
CGAACTA	20	7.033957E-4	45.0	20
CGAACAC	25	3.891362E-5	45.0	42
CGAAACG	20	7.033957E-4	45.0	20
ACGTTAC	20	7.033957E-4	45.0	19
GACACGT	20	7.033957E-4	45.0	12
GACCGTT	20	7.033957E-4	45.0	9
ATGCTCG	20	7.033957E-4	45.0	35
CACGAAA	40	6.8175723E-9	45.0	35
TCTAGCG	35	1.2122473E-7	45.0	1
CCGTCCA	20	7.033957E-4	45.0	45
TAGTTCG	25	3.891362E-5	45.0	32
CGTTAGA	35	1.2122473E-7	45.0	37
ATATCGA	25	3.891362E-5	45.0	21