SRR1545188_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545188_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	998053
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3471	0.3477771220566443	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2604	0.26090798785234853	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTATCG	30	2.165214E-6	45.000004	11
CCTAAGT	30	2.165214E-6	45.000004	20
GCCGATC	30	2.165214E-6	45.000004	9
GCGATAC	30	2.165214E-6	45.000004	9
ACCGTTA	30	2.165214E-6	45.000004	35
CGTTTAG	30	2.165214E-6	45.000004	30
GACAGTA	35	1.2117198E-7	45.0	9
CTATGCG	45	3.8380676E-10	45.0	1
CCTTACG	25	3.890435E-5	45.0	40
GATCGAC	25	3.890435E-5	45.0	17
CGAAACA	25	3.890435E-5	45.0	17
ACGTTCA	20	7.0328393E-4	45.0	17
AACCCGC	20	7.0328393E-4	45.0	36
CACGCGT	20	7.0328393E-4	45.0	38
ATGTACG	45	3.8380676E-10	45.0	1
TACATGC	20	7.0328393E-4	45.0	28
TAGTTAT	20	7.0328393E-4	45.0	18
GTTACCT	25	3.890435E-5	45.0	33
CCACTAG	20	7.0328393E-4	45.0	20
ATTCACG	25	3.890435E-5	45.0	12