SRR1545186_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545186_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1607798
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5685	0.3535891946625136	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5514	0.3429535302320316	No Hit
GTCTGAGGGTCAAGAAGAAGGAGCTACTCCCCACCACCAGCACCCAAAGCT	1919	0.11935578971985286	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTAAG	125	0.0	45.000004	1
TCGTTGC	35	1.2123382E-7	45.0	34
TAGCGAT	25	3.891503E-5	45.0	11
TGAACGT	40	6.8175723E-9	45.0	10
CGCGATA	20	7.034127E-4	45.0	11
CGTTCCA	20	7.034127E-4	45.0	33
AACGGTC	20	7.034127E-4	45.0	38
TCAATCG	35	1.2123382E-7	45.0	21
GTATCGC	25	3.891503E-5	45.0	9
GTATACG	50	2.1827873E-11	45.0	1
AGTAGTA	20	7.034127E-4	45.0	10
GTCCAAT	45	3.8562575E-10	45.0	36
TATACGT	50	2.1827873E-11	45.0	43
CAATCGA	35	1.2123382E-7	45.0	22
TAAGCGA	35	1.2123382E-7	45.0	45
GCCACTC	20	7.034127E-4	45.0	35
AATACGG	80	0.0	45.0	2
ATCGCCT	40	6.8175723E-9	45.0	27
TACACGG	75	0.0	45.0	2
ATTCTCG	25	3.891503E-5	45.0	30