SRR1545182_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545182_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1181048
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5264	0.4457058476878163	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3933	0.33300932730930494	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATA	35	1.2119744E-7	45.000004	6
CTATGCG	25	3.8908707E-5	45.000004	1
GTACCTA	25	3.8908707E-5	45.000004	9
CGAACCT	35	1.2119744E-7	45.000004	37
CTCCGAT	30	2.1655524E-6	45.000004	29
CGTTCGA	30	2.1655524E-6	45.000004	14
CCGAGTA	25	3.8908707E-5	45.000004	39
TGTTACG	35	1.2119744E-7	45.000004	1
TTACGCG	55	1.8189894E-12	45.000004	1
TACTACG	25	3.8908707E-5	45.000004	1
ACGTAAC	50	2.1827873E-11	45.000004	13
TAGTGCG	55	1.8189894E-12	45.000004	1
CGCAACA	35	1.2119744E-7	45.000004	30
TCGACAG	25	3.8908707E-5	45.000004	1
TCGAATC	30	2.1655524E-6	45.000004	32
TAGTACG	35	1.2119744E-7	45.000004	1
TCACGAC	335	0.0	45.0	25
TCGCACA	20	7.033367E-4	45.0	40
GTACACG	40	6.8157533E-9	45.0	1
CGAGTGT	20	7.033367E-4	45.0	19