##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545180_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2784472 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.039033971252 31.0 31.0 33.0 30.0 34.0 2 31.319791328481667 31.0 31.0 34.0 30.0 34.0 3 31.429521288057483 31.0 31.0 34.0 30.0 34.0 4 35.209883956455656 37.0 35.0 37.0 32.0 37.0 5 35.06210584987028 37.0 35.0 37.0 32.0 37.0 6 35.11355869263544 37.0 35.0 37.0 32.0 37.0 7 35.7426571357155 37.0 35.0 37.0 35.0 37.0 8 35.745997445835336 37.0 35.0 37.0 35.0 37.0 9 37.43011278260295 39.0 37.0 39.0 35.0 39.0 10 36.561653340381945 39.0 35.0 39.0 32.0 39.0 11 36.339162325927504 38.0 35.0 39.0 32.0 39.0 12 35.83557564953068 37.0 35.0 39.0 31.0 39.0 13 35.63674944477804 37.0 35.0 39.0 30.0 39.0 14 36.59395174381355 38.0 35.0 40.0 31.0 41.0 15 36.79416241211978 38.0 35.0 41.0 31.0 41.0 16 36.856392881666615 38.0 35.0 41.0 31.0 41.0 17 36.7759280754125 38.0 35.0 40.0 31.0 41.0 18 36.680601564677254 38.0 35.0 40.0 31.0 41.0 19 36.63935101520145 38.0 35.0 40.0 31.0 41.0 20 36.52744326392939 38.0 35.0 40.0 31.0 41.0 21 36.41237261498769 38.0 35.0 40.0 30.0 41.0 22 36.3418105838378 38.0 35.0 40.0 30.0 41.0 23 36.263551581772056 38.0 35.0 40.0 30.0 41.0 24 36.19716879896799 38.0 34.0 40.0 30.0 41.0 25 36.0876123013627 38.0 34.0 40.0 30.0 41.0 26 35.96025997029239 38.0 34.0 40.0 30.0 41.0 27 35.86553644640708 38.0 34.0 40.0 30.0 41.0 28 35.84817947531884 38.0 34.0 40.0 29.0 41.0 29 35.79801125671222 38.0 34.0 40.0 29.0 41.0 30 35.696416053025494 38.0 34.0 40.0 29.0 41.0 31 35.5824217302239 38.0 34.0 40.0 29.0 41.0 32 35.45475695212593 38.0 34.0 40.0 28.0 41.0 33 35.26416103304325 38.0 34.0 40.0 27.0 41.0 34 35.06644168086445 38.0 34.0 40.0 26.0 41.0 35 34.92420466070408 37.0 33.0 40.0 25.0 41.0 36 34.77822186755694 37.0 33.0 40.0 25.0 41.0 37 34.726646919056826 37.0 33.0 40.0 24.0 41.0 38 34.667209079495144 37.0 33.0 40.0 24.0 41.0 39 34.593698194846276 37.0 33.0 40.0 24.0 41.0 40 34.48167049264636 37.0 33.0 40.0 24.0 41.0 41 34.40398287359327 37.0 33.0 40.0 24.0 41.0 42 34.32633152712615 37.0 33.0 40.0 23.0 41.0 43 34.28295346478614 37.0 33.0 40.0 23.0 41.0 44 34.16608822067523 36.0 33.0 40.0 23.0 41.0 45 34.09456334989183 36.0 33.0 40.0 23.0 41.0 46 34.02547089717548 36.0 33.0 40.0 23.0 41.0 47 33.92665431722783 36.0 33.0 40.0 23.0 41.0 48 33.84802468834307 36.0 33.0 40.0 23.0 41.0 49 33.794559614892876 36.0 32.0 40.0 23.0 41.0 50 33.74722101712641 35.0 32.0 40.0 23.0 41.0 51 33.600059544502514 35.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 0.0 11 2.0 12 5.0 13 10.0 14 29.0 15 101.0 16 323.0 17 787.0 18 1755.0 19 3475.0 20 5706.0 21 8992.0 22 13468.0 23 19244.0 24 26864.0 25 37433.0 26 48203.0 27 56996.0 28 63666.0 29 73295.0 30 86999.0 31 104870.0 32 127561.0 33 159048.0 34 230438.0 35 295048.0 36 231297.0 37 282788.0 38 375554.0 39 530240.0 40 273.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.50947684156996 23.51106421612428 29.045758046767933 13.933700895537825 2 31.380994314182363 25.69144168086445 29.936842604271114 12.990721400682068 3 28.46582763267147 25.81875486627267 32.49452678999825 13.22089071105761 4 26.068927969108685 27.65429137014127 31.91179512668829 14.364985534061752 5 22.797751243323688 31.809298136235526 30.858633162768378 14.534317457672405 6 19.960552664921753 42.08094030035138 27.590724561065795 10.367782473661075 7 87.50430961417462 3.974757153241261 6.881376433305847 1.6395567992782831 8 88.65705957897943 2.921056487549525 6.660400966502805 1.761482966968244 9 83.88075010271248 5.437476117554783 7.9472158455893975 2.734557934143349 10 37.726434311424214 34.49548065126889 14.816740839915072 12.961344197391822 11 34.394671593034516 24.437379869504884 24.714559887835108 16.453388649625495 12 32.2607661344772 22.385141599556395 27.890027265492346 17.464065000474058 13 24.07400756768249 29.723947664045465 28.247904809242115 17.954139959029934 14 19.22709224585487 32.7772015664011 29.71773463694374 18.277971550800295 15 17.88568892055657 24.73829867924691 38.54105913077955 18.834953269416967 16 20.942749648766444 22.120423548881078 35.837602245596294 21.099224556756184 17 21.032569190855575 21.647694787378 29.676649648479135 27.64308637328729 18 22.30893325556874 24.109813278783196 32.59386339672297 20.987390068925098 19 25.69704417929144 26.237936671656243 26.530308079951965 21.534711069100354 20 27.168310545051273 25.56987464768904 26.90071941825955 20.36109538900014 21 24.33725316684815 26.808745069083116 29.068132127024445 19.785869637044296 22 23.796324761031894 23.75322861928581 28.149286471546493 24.301160148135807 23 20.801178823130563 27.495158866743857 27.60681378731767 24.096848522807914 24 20.24965594913506 25.832222410568324 34.28919378611098 19.62892785418564 25 20.89121384592842 26.71946422876581 30.929490402489236 21.459831522816533 26 19.957823242611166 29.369733292344115 27.827286465800338 22.84515699924438 27 19.502045630194882 29.01102973921088 29.269355195527197 22.217569435067045 28 19.402565369664337 26.90348475402159 32.633080885711905 21.06086899060217 29 19.751033589132877 25.05200267770694 32.433330268718805 22.763633464441373 30 21.68798967991059 27.23115908509764 31.102090450182295 19.97876078480947 31 25.655635969763747 26.842970588319798 27.189535394861213 20.31185804705524 32 26.16567880732864 25.879915474100656 27.37452558330628 20.57988013526442 33 25.43591747376163 26.32951597286667 26.838337753082094 21.396228800289606 34 20.661655064227617 27.094831623374198 29.139635808871482 23.1038775035267 35 21.37442933525638 26.65514323720978 29.35838464168431 22.612042785849525 36 25.709613887300716 27.286860848304457 26.172646016910928 20.830879247483907 37 21.125728683930024 30.277302124065177 27.219666780632018 21.377302411372785 38 22.056892653257062 29.923446886878374 26.067706911759213 21.951953548105347 39 20.971516323381955 29.773256832893274 26.382631967568713 22.872594876156054 40 23.03237382167966 26.410033931028938 27.413419851232117 23.14417239605929 41 20.771191091165576 25.755942239677754 27.764832973719972 25.708033695436693 42 21.069344565145563 27.236689756621722 26.312313429619692 25.381652248613022 43 20.976328725876936 26.718207257964888 27.711645152115018 24.593818864043165 44 21.48281613174778 27.54511447771786 28.82086801375629 22.151201376778076 45 19.82677505825162 30.586050066224406 26.21046288129311 23.376711994230863 46 21.615336767616984 28.801295182713275 28.63106542281625 20.952302626853495 47 21.070350141786307 28.81663022648459 27.185441261395336 22.927578370333766 48 21.285292148744897 27.39373927983474 29.02916603219569 22.291802539224673 49 21.68770237229895 26.055532251715945 29.805076150882464 22.45168922510264 50 21.207000824572845 28.348713867476494 28.3735659758834 22.070719332067267 51 19.790430645379086 29.16991084844811 27.8032603667769 23.236398139395906 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1174.0 1 2162.5 2 3151.0 3 15314.0 4 27477.0 5 19673.0 6 11869.0 7 12254.5 8 12640.0 9 13254.0 10 13868.0 11 14059.0 12 14250.0 13 13920.0 14 13590.0 15 12922.5 16 12255.0 17 11763.0 18 11271.0 19 11027.0 20 10783.0 21 11492.5 22 12202.0 23 14242.0 24 16282.0 25 17010.0 26 20485.5 27 23233.0 28 32491.5 29 41750.0 30 46560.5 31 51371.0 32 60112.0 33 68853.0 34 79774.5 35 90696.0 36 96466.0 37 102236.0 38 116986.0 39 131736.0 40 147009.5 41 162283.0 42 182233.5 43 202184.0 44 202257.5 45 202331.0 46 205280.0 47 208229.0 48 208843.5 49 209458.0 50 199599.0 51 189740.0 52 179018.0 53 168296.0 54 157110.0 55 145924.0 56 138287.0 57 130650.0 58 124859.5 59 119069.0 60 107285.0 61 95501.0 62 86266.0 63 77031.0 64 69214.5 65 61398.0 66 51662.5 67 41927.0 68 34588.5 69 27250.0 70 23710.5 71 20171.0 72 17599.0 73 15027.0 74 11945.5 75 7139.0 76 5414.0 77 4059.0 78 2704.0 79 2026.0 80 1348.0 81 1074.0 82 800.0 83 549.5 84 299.0 85 187.5 86 76.0 87 64.5 88 53.0 89 30.5 90 8.0 91 5.0 92 2.0 93 4.5 94 7.0 95 4.5 96 2.0 97 1.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2784472.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.581829318911357 #Duplication Level Percentage of deduplicated Percentage of total 1 77.6381377326146 14.42658623985576 2 7.525814317504263 2.7968679426736713 3 2.9412930366827648 1.6396381555362483 4 1.6503275777927318 1.2266442148334777 5 1.089232719326766 1.0119968239551822 6 0.7955710462005352 0.8869899234939651 7 0.5944888017932964 0.773268261284901 8 0.5012555904517155 0.7451396661539128 9 0.38549157598465755 0.6446824801942549 >10 4.4634116458295185 19.192097961537854 >50 1.2319611965453798 16.298164610141708 >100 1.1746535519897183 38.43383574885449 >500 0.006027847111828004 0.7456509326884597 >1k 0.002138913491293808 0.5850091704782115 >5k 0.0 0.0 >10k+ 1.9444668102670977E-4 0.5934278683178399 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16424 0.5898425266980598 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.027545617266038228 0.0 2 0.0 0.0 0.0 0.09743319379760328 0.0 3 0.0 0.0 0.0 0.14128351802424302 0.0 4 0.0 0.0 0.0 0.20219273169204072 0.0 5 0.0 0.0 0.0 0.3496174499151006 0.0 6 0.0 0.0 0.0 0.5430113860006494 0.0 7 0.0 0.0 0.0 0.6793747611755478 0.0 8 0.0 0.0 0.0 1.0329786042021611 0.0 9 0.0 0.0 0.0 1.2038548062253813 0.0 10 0.0 0.0 0.0 1.471805067531654 0.0 11 0.0 0.0 0.0 1.6609253028940496 0.0 12 0.0 0.0 0.0 1.8390560221111938 0.0 13 0.0 0.0 0.0 1.914151049103744 0.0 14 0.0 0.0 0.0 1.9439592138114514 0.0 15 0.0 0.0 0.0 1.9847209812129554 0.0 16 7.18269029101388E-5 0.0 0.0 2.0712364857682175 0.0 17 7.18269029101388E-5 0.0 0.0 2.1753495815364636 0.0 18 7.18269029101388E-5 0.0 0.0 2.3354876615746183 0.0 19 7.18269029101388E-5 0.0 0.0 2.399629085873372 0.0 20 7.18269029101388E-5 0.0 0.0 2.4759092567639396 0.0 21 7.18269029101388E-5 0.0 0.0 2.563645818668674 0.0 22 7.18269029101388E-5 0.0 0.0 2.658816465024608 0.0 23 7.18269029101388E-5 0.0 0.0 2.7671673480645524 0.0 24 7.18269029101388E-5 0.0 0.0 2.8532518912023535 0.0 25 7.18269029101388E-5 0.0 0.0 2.9308249463453033 0.0 26 7.18269029101388E-5 0.0 0.0 3.0025800223525323 0.0 27 7.18269029101388E-5 0.0 0.0 3.0834571150293484 0.0 28 7.18269029101388E-5 0.0 0.0 3.1636518521285186 0.0 29 7.18269029101388E-5 0.0 0.0 3.2620906225668636 0.0 30 1.0774035436520819E-4 0.0 0.0 3.3919177495769395 0.0 31 1.0774035436520819E-4 0.0 0.0 3.488884068505627 0.0 32 1.0774035436520819E-4 0.0 0.0 3.5838033207013753 0.0 33 1.0774035436520819E-4 0.0 0.0 3.686228484251233 0.0 34 1.0774035436520819E-4 0.0 0.0 3.796662347475572 0.0 35 1.0774035436520819E-4 0.0 0.0 3.929218896796233 0.0 36 1.0774035436520819E-4 0.0 0.0 4.040442855952583 0.0 37 1.0774035436520819E-4 0.0 0.0 4.154863112288434 0.0 38 1.0774035436520819E-4 3.59134514550694E-5 0.0 4.284259277881049 0.0 39 1.436538058202776E-4 3.59134514550694E-5 0.0 4.463251919933115 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGTAA 45 3.8562575E-10 45.0 27 CGACGGT 795 0.0 43.301884 28 CGTTTTT 11120 0.0 43.199192 1 CGGTCTA 810 0.0 43.055557 31 TAGTACG 215 0.0 42.906975 1 ACGGTCT 835 0.0 41.227547 30 TCACGAC 850 0.0 41.02941 25 ACGGGTA 345 0.0 40.43478 5 AGTACGG 485 0.0 40.360825 2 TAGCGAT 45 1.9299478E-8 40.0 45 TACGGGA 1070 0.0 39.53271 4 GACGGTC 915 0.0 39.34426 29 CTCACGA 900 0.0 39.000004 24 ACGGGAG 1225 0.0 38.938778 5 CACGACG 890 0.0 38.932583 26 CGGGTAT 500 0.0 38.7 6 TACGGGT 210 0.0 38.57143 4 CGCATCG 140 0.0 38.571426 21 CGCGTAG 35 6.2514937E-6 38.571426 2 GGGCGAT 4510 0.0 38.564304 7 >>END_MODULE