SRR1545173_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545173_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1754859
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9993	0.5694474598813922	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGA	35	1.212411E-7	45.000004	15
CTATGCG	45	3.8562575E-10	45.0	1
CTATACG	25	3.89165E-5	45.0	1
TACGCTA	25	3.89165E-5	45.0	27
TACGCGC	20	7.034305E-4	45.0	34
TGTCGAC	20	7.034305E-4	45.0	43
CGTTTTT	7550	0.0	43.301323	1
GCCGATT	80	0.0	42.1875	9
CAATCGA	140	0.0	40.178574	41
CGGTCTA	230	0.0	40.1087	31
TTACGCG	40	3.4596087E-7	39.375	1
ACGGGAT	885	0.0	39.152542	5
CGTAAGG	225	0.0	39.0	2
TACGGGA	630	0.0	38.928574	4
TATGGGC	515	0.0	38.883495	4
ACGGGTA	220	0.0	38.863636	5
CGAGGGT	250	0.0	38.7	4
GACCGAC	35	6.2501713E-6	38.57143	9
AATGCGC	35	6.2501713E-6	38.57143	42
TATTCCG	35	6.2501713E-6	38.57143	1