SRR1545169_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545169_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1278999
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7724	0.6039097763172606	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4802	0.3754498635260856	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1531	0.11970298647614268	No Hit
GGTAGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1286	0.10054738119419952	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAG	55	1.8189894E-12	45.000004	1
ACACGTG	30	2.1656942E-6	45.000004	42
GTAGCAC	30	2.1656942E-6	45.000004	24
ACAATCG	30	2.1656942E-6	45.000004	45
TAGTCCG	60	0.0	45.000004	1
AGTAAGA	30	2.1656942E-6	45.000004	16
TGATCCA	20	7.033585E-4	45.0	31
TGTTTCG	20	7.033585E-4	45.0	9
CGGCGTA	20	7.033585E-4	45.0	14
GCCTTAC	20	7.033585E-4	45.0	23
TCCGCAA	105	0.0	45.0	32
ACGCATT	20	7.033585E-4	45.0	15
TAGCGTC	20	7.033585E-4	45.0	32
CGACAGG	35	1.2120654E-7	45.0	2
TCTAGCG	80	0.0	45.0	1
ATGTACC	20	7.033585E-4	45.0	40
TAGCACG	90	0.0	45.0	1
CTAACGG	80	0.0	45.0	2
TACGCCT	45	3.8562575E-10	45.0	34
CATAGGT	20	7.033585E-4	45.0	31