##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545169_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1278999 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.05182724927854 31.0 31.0 33.0 28.0 34.0 2 31.32317382578094 31.0 31.0 34.0 28.0 34.0 3 31.39798154650629 31.0 31.0 34.0 28.0 34.0 4 35.14996258793009 37.0 35.0 37.0 32.0 37.0 5 34.98946207151061 35.0 35.0 37.0 32.0 37.0 6 35.05385696157698 37.0 35.0 37.0 32.0 37.0 7 35.724323474842436 37.0 35.0 37.0 35.0 37.0 8 35.7494274819605 37.0 35.0 37.0 35.0 37.0 9 37.46075876525314 39.0 37.0 39.0 35.0 39.0 10 36.67947590263949 39.0 35.0 39.0 32.0 39.0 11 36.20377341968211 38.0 35.0 39.0 31.0 39.0 12 34.85993421417843 35.0 34.0 39.0 30.0 39.0 13 34.236740607303055 35.0 33.0 39.0 25.0 39.0 14 35.05114312051847 36.0 33.0 40.0 25.0 41.0 15 35.608364040941396 36.0 33.0 40.0 30.0 41.0 16 35.8933017148567 36.0 34.0 40.0 31.0 41.0 17 35.85171997788896 36.0 34.0 40.0 31.0 41.0 18 35.769318818857556 36.0 34.0 40.0 30.0 41.0 19 35.64798877872461 36.0 34.0 40.0 30.0 41.0 20 35.45890731736303 35.0 34.0 40.0 30.0 41.0 21 35.26191810939649 35.0 34.0 40.0 29.0 41.0 22 35.139060312009626 35.0 34.0 40.0 29.0 41.0 23 35.145867197706956 35.0 34.0 40.0 29.0 41.0 24 35.05272560807319 35.0 34.0 40.0 29.0 41.0 25 34.98194291004137 35.0 34.0 39.0 29.0 41.0 26 34.807433782199986 35.0 34.0 39.0 29.0 41.0 27 34.696824626133406 35.0 34.0 39.0 29.0 41.0 28 34.70054550472674 35.0 34.0 39.0 28.0 41.0 29 34.771045168917254 35.0 34.0 39.0 29.0 41.0 30 34.70205997033618 35.0 34.0 39.0 29.0 41.0 31 34.43157891444794 35.0 33.0 39.0 27.0 41.0 32 34.19304237141702 35.0 33.0 39.0 25.0 41.0 33 33.95248237097918 35.0 33.0 39.0 24.0 41.0 34 33.80234620980939 35.0 33.0 39.0 24.0 41.0 35 33.646696361764164 35.0 33.0 39.0 23.0 41.0 36 33.37884236031459 35.0 33.0 39.0 23.0 41.0 37 33.266919677028675 35.0 32.0 39.0 23.0 41.0 38 33.27130904715328 35.0 32.0 39.0 23.0 41.0 39 33.22205959504269 35.0 32.0 39.0 23.0 41.0 40 33.01390775129613 35.0 32.0 39.0 22.0 41.0 41 33.041941393230175 35.0 32.0 38.0 22.0 41.0 42 32.969578553227954 35.0 32.0 38.0 22.0 41.0 43 32.87837207065838 35.0 32.0 38.0 22.0 41.0 44 32.75660027881179 35.0 32.0 38.0 21.0 40.0 45 32.679114682654166 35.0 32.0 38.0 22.0 40.0 46 32.615740121767104 35.0 32.0 38.0 21.0 40.0 47 32.55569863619909 35.0 32.0 38.0 21.0 40.0 48 32.55891130485637 35.0 32.0 38.0 21.0 40.0 49 32.52464466352202 35.0 31.0 38.0 20.0 40.0 50 32.41794481465583 35.0 31.0 38.0 20.0 40.0 51 32.24513232613943 35.0 31.0 37.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 2.0 13 3.0 14 21.0 15 67.0 16 213.0 17 569.0 18 1307.0 19 2460.0 20 4051.0 21 6212.0 22 8982.0 23 12639.0 24 17139.0 25 22695.0 26 27906.0 27 31696.0 28 34917.0 29 39313.0 30 45815.0 31 55922.0 32 68385.0 33 87698.0 34 150118.0 35 218608.0 36 82404.0 37 89958.0 38 113653.0 39 156097.0 40 148.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.747249215988443 23.500331118319874 30.29650531392128 14.455914351770408 2 30.54357352898634 27.32605733077196 29.5258244924351 12.604544647806604 3 26.5092466843211 26.408152000118847 33.88689123290949 13.195710082650573 4 24.869839616762796 28.61917796651913 32.97883735640138 13.532145060316699 5 22.45427869763776 32.332707062319834 32.14529487513282 13.067719364909589 6 19.50720837154681 40.248585026258816 29.312454505437458 10.931752096756917 7 85.80069257286362 5.5450395191864885 7.160990743542412 1.493277164407478 8 87.69991219696028 3.8111835896666064 6.567010607514158 1.921893605858957 9 84.81359250476349 5.112904701254653 7.927058582532121 2.1464442114497353 10 58.82123441847883 20.052556726002134 12.10704621348414 9.019162642034905 11 54.26814250832096 18.1753074083717 17.572023121206506 9.98452696210083 12 46.7419442861175 21.997906175063466 20.34137634196743 10.9187731968516 13 20.355058917168815 48.8624306977566 20.48273689033377 10.299773494740808 14 12.399696950505826 50.37111053253365 26.123398063641957 11.105794453318572 15 10.123698298434949 22.63926711436053 55.26055923421364 11.976475352990894 16 11.379524143490338 17.686644008322133 52.33647563446101 18.597356213726517 17 13.23284850105434 17.76686299207427 28.135205735110034 40.86508277176135 18 19.73316632772973 23.21706271857914 36.17969990594207 20.870071047749057 19 29.172892238383298 24.37914337696902 25.614484452294334 20.83347993235335 20 32.39728881727038 23.434107454345156 23.82840017857715 20.34020354980731 21 20.309007278348147 31.49634987986699 28.1871213347313 20.007521507053564 22 21.435044124350373 26.177815619871474 24.000722439970634 28.38641781580752 23 16.688519693916884 33.05186321490478 23.263036171255802 26.99658091992253 24 17.789380601548554 24.49595347611687 42.65757830928719 15.05708761304739 25 14.288439631305419 25.52973067218974 39.514026203304304 20.667803493200545 26 13.157867988950734 38.760859078075896 28.473908110952394 19.60736482202097 27 15.090942213402824 38.909725496267 28.362961972605138 17.636370317725035 28 12.148484869808343 31.59658451648516 41.47657660404738 14.778354009659116 29 12.56162045474625 24.73176288644479 40.09706027917145 22.609556379637514 30 17.15161622487586 33.89603901175842 30.815974054709972 18.136370708655754 31 29.760773855178936 29.367106620098998 23.600018451929987 17.272101072792083 32 31.27922695795696 28.13770769171829 25.86905853718416 14.714006813140589 33 29.510578194353553 29.42668446183304 23.476875275117496 17.58586206869591 34 18.82018672414912 30.28563743990417 26.632937164141644 24.26123867180506 35 18.863345475641495 27.546620443018327 30.846544837017078 22.7434892443231 36 32.45772670658852 24.529886262616312 25.704789448623494 17.30759758217168 37 19.360531165387933 35.39173994663014 28.159365253608488 17.088363634373444 38 20.335825125742865 35.821216435665704 22.72863387696159 21.11432456162984 39 18.898685612733082 34.85632123246383 26.023319799311807 20.221673355491287 40 24.00275527971484 27.445603944960084 23.6169066590357 24.934734116289377 41 16.609473502324864 25.33840917780233 26.222459908100003 31.8296574117728 42 22.199391868171904 26.331216834415038 23.349510046528575 28.119881250884482 43 22.575467220850058 26.772812175771833 24.561395278651506 26.090325324726603 44 19.678826957644223 32.73591300696873 27.428168434846313 20.157091600540735 45 15.485547682210854 42.03208915722374 20.63864006148558 21.843723099079824 46 21.552010595786236 35.160152588078645 25.567260021313544 17.720576794821575 47 22.216123702989606 29.31566013734178 25.356391990924156 23.111824168744462 48 23.164756188237835 25.051544215437225 30.44224428635206 21.341455309972876 49 21.2056459778311 23.999158717090474 32.83153466109043 21.963660643987996 50 19.862720768350876 36.3120690477475 24.450761884880283 19.374448299021342 51 17.837308707825418 37.865549543041084 21.453339682048227 22.843802067085274 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1870.0 1 2040.5 2 2211.0 3 6763.0 4 11315.0 5 8153.5 6 4992.0 7 5785.5 8 6579.0 9 7844.0 10 9109.0 11 10084.5 12 11060.0 13 11419.0 14 11778.0 15 11280.5 16 10783.0 17 9996.5 18 9210.0 19 8652.0 20 8094.0 21 8445.0 22 8796.0 23 8019.5 24 7243.0 25 7219.5 26 7681.5 27 8167.0 28 8761.0 29 9355.0 30 11683.0 31 14011.0 32 16905.5 33 19800.0 34 23823.0 35 27846.0 36 30076.0 37 32306.0 38 40877.0 39 49448.0 40 76023.5 41 102599.0 42 119750.0 43 136901.0 44 146103.0 45 155305.0 46 140615.0 47 125925.0 48 117347.5 49 108770.0 50 101981.0 51 95192.0 52 82468.5 53 69745.0 54 60092.0 55 50439.0 56 47170.5 57 43902.0 58 37556.5 59 31211.0 60 29448.5 61 27686.0 62 23033.5 63 18381.0 64 16298.5 65 14216.0 66 11934.5 67 9653.0 68 7876.5 69 6100.0 70 5011.0 71 3922.0 72 3732.0 73 3542.0 74 2798.5 75 1636.0 76 1217.0 77 850.5 78 484.0 79 385.0 80 286.0 81 245.5 82 205.0 83 125.0 84 45.0 85 34.0 86 23.0 87 17.0 88 11.0 89 8.0 90 5.0 91 6.0 92 7.0 93 4.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1278999.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.678857934264148 #Duplication Level Percentage of deduplicated Percentage of total 1 80.59914697973424 15.860991630370652 2 8.236822978971027 3.241825384657064 3 3.0720790940413996 1.813650241633908 4 1.6208016903911997 1.275821048192944 5 0.9179140404995489 0.9031749999428504 6 0.5815226420647442 0.6866220875250023 7 0.4179317514485746 0.5757093694082285 8 0.3029387115372235 0.47691902937040387 9 0.23425263751481687 0.4148841936942681 >10 2.1809326631028645 9.448909701567636 >50 0.6136110945148727 8.773262075796657 >100 1.1989506847235236 52.83296315703884 >500 0.021104080468398127 2.3988127389748897 >1k 0.001592760790067783 0.691207237791053 >5k 3.9819019751694576E-4 0.6052471040356073 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7724 0.6039097763172606 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4802 0.3754498635260856 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1531 0.11970298647614268 No Hit GGTAGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA 1286 0.10054738119419952 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03596562624364835 0.0 2 0.0 0.0 0.0 0.18553571973082075 0.0 3 0.0 0.0 0.0 0.2803755124124413 0.0 4 0.0 0.0 0.0 0.42916374445953437 0.0 5 0.0 0.0 0.0 0.7337769615144344 0.0 6 0.0 0.0 0.0 1.0348718020889773 0.0 7 0.0 0.0 0.0 1.2236131537241233 0.0 8 0.0 0.0 0.0 1.6442546084867933 0.0 9 0.0 0.0 0.0 1.8287739083455108 0.0 10 0.0 0.0 0.0 2.1587976222029885 0.0 11 0.0 0.0 0.0 2.532840135136931 0.0 12 0.0 0.0 0.0 2.8337004172794504 0.0 13 7.81861440079312E-5 0.0 0.0 2.9552016850677756 0.0 14 7.81861440079312E-5 0.0 0.0 3.007039098545034 0.0 15 7.81861440079312E-5 0.0 0.0 3.0802995154804655 0.0 16 7.81861440079312E-5 0.0 0.0 3.250354378697716 0.0 17 7.81861440079312E-5 0.0 0.0 3.443865085117346 0.0 18 7.81861440079312E-5 0.0 0.0 3.7511366310685155 0.0 19 7.81861440079312E-5 0.0 0.0 3.865132029032079 0.0 20 7.81861440079312E-5 0.0 0.0 3.9986739629976253 0.0 21 7.81861440079312E-5 0.0 0.0 4.1271337976026565 0.0 22 7.81861440079312E-5 0.0 0.0 4.249729671407093 0.0 23 7.81861440079312E-5 0.0 0.0 4.403678188958709 0.0 24 7.81861440079312E-5 0.0 0.0 4.513529721289853 0.0 25 7.81861440079312E-5 0.0 0.0 4.591168562289728 0.0 26 7.81861440079312E-5 0.0 0.0 4.67537503938627 0.0 27 7.81861440079312E-5 0.0 0.0 4.769823901347851 0.0 28 7.81861440079312E-5 0.0 0.0 4.860207083821019 0.0 29 7.81861440079312E-5 0.0 0.0 4.955594179510696 0.0 30 7.81861440079312E-5 0.0 0.0 5.089917974916322 0.0 31 7.81861440079312E-5 0.0 0.0 5.199534948815441 0.0 32 7.81861440079312E-5 0.0 0.0 5.29328013548095 0.0 33 7.81861440079312E-5 0.0 0.0 5.387728997442531 0.0 34 7.81861440079312E-5 0.0 0.0 5.485774422028477 0.0 35 7.81861440079312E-5 0.0 0.0 5.616345282521722 0.0 36 7.81861440079312E-5 0.0 0.0 5.724711278116715 0.0 37 7.81861440079312E-5 0.0 0.0 5.838315745360239 0.0 38 7.81861440079312E-5 0.0 0.0 5.9430851783308665 0.0 39 7.81861440079312E-5 0.0 0.0 6.046369074565344 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTAG 55 1.8189894E-12 45.000004 1 ACACGTG 30 2.1656942E-6 45.000004 42 GTAGCAC 30 2.1656942E-6 45.000004 24 ACAATCG 30 2.1656942E-6 45.000004 45 TAGTCCG 60 0.0 45.000004 1 AGTAAGA 30 2.1656942E-6 45.000004 16 TGATCCA 20 7.033585E-4 45.0 31 TGTTTCG 20 7.033585E-4 45.0 9 CGGCGTA 20 7.033585E-4 45.0 14 GCCTTAC 20 7.033585E-4 45.0 23 TCCGCAA 105 0.0 45.0 32 ACGCATT 20 7.033585E-4 45.0 15 TAGCGTC 20 7.033585E-4 45.0 32 CGACAGG 35 1.2120654E-7 45.0 2 TCTAGCG 80 0.0 45.0 1 ATGTACC 20 7.033585E-4 45.0 40 TAGCACG 90 0.0 45.0 1 CTAACGG 80 0.0 45.0 2 TACGCCT 45 3.8562575E-10 45.0 34 CATAGGT 20 7.033585E-4 45.0 31 >>END_MODULE