SRR1545168_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545168_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1009740
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5883	0.582625230257294	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1266	0.12537881038683227	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCACG	25	3.890467E-5	45.000004	1
TGTCGAT	25	3.890467E-5	45.000004	30
TACCCGC	20	7.0328783E-4	45.0	28
CGTATTA	20	7.0328783E-4	45.0	27
CCAATCG	45	3.8380676E-10	45.0	24
ACCTCGT	20	7.0328783E-4	45.0	11
TATTACG	35	1.211738E-7	45.0	1
ACCGTTA	20	7.0328783E-4	45.0	34
ACCCGTA	20	7.0328783E-4	45.0	33
AAGGCGT	20	7.0328783E-4	45.0	28
CGATCAT	20	7.0328783E-4	45.0	10
CCCGCTA	20	7.0328783E-4	45.0	30
TAGTACG	70	0.0	45.0	1
AGTCGAC	20	7.0328783E-4	45.0	28
ACGGTAC	20	7.0328783E-4	45.0	37
GTATTCG	30	2.1652395E-6	44.999996	33
ACGGTCT	335	0.0	43.656715	30
CGTTTTT	4270	0.0	42.892273	1
TCACGAC	360	0.0	42.5	25
CTCACGA	365	0.0	41.91781	24