SRR1545152_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545152_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2130646
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8273	0.3882859940130834	No Hit
AATTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2521	0.11832092238691927	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2287	0.10733833776235002	No Hit
GAAATTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2258	0.10597724821486065	No Hit
AGTATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2131	0.10001661467930383	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTGACG	30	2.1663782E-6	45.000004	1
CTATGCG	35	1.2125747E-7	45.000004	1
GGTACGT	25	3.8919305E-5	45.000004	8
CGTGCAA	25	3.8919305E-5	45.000004	11
CGCATCG	35	1.2125747E-7	45.000004	29
ATTCGCA	25	3.8919305E-5	45.000004	33
TACGGGT	45	3.8562575E-10	45.000004	4
AATATCG	30	2.1663782E-6	45.000004	30
ACGGCAA	25	3.8919305E-5	45.000004	36
ATCCCGC	25	3.8919305E-5	45.000004	23
CCATACG	25	3.8919305E-5	45.000004	43
GTCGTTC	35	1.2125747E-7	45.000004	17
CTACCGT	30	2.1663782E-6	45.000004	21
GTTCACG	45	3.8562575E-10	45.000004	1
ACCGTTG	25	3.8919305E-5	45.000004	10
TAAATCG	25	3.8919305E-5	45.000004	31
TCGACTG	60	0.0	45.000004	1
TCGACTA	25	3.8919305E-5	45.000004	35
TAGTCCG	25	3.8919305E-5	45.000004	1
ATCGACT	25	3.8919305E-5	45.000004	34