##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545150_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2167284 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.83817995241971 31.0 31.0 33.0 30.0 33.0 2 31.149626444896008 31.0 31.0 33.0 30.0 34.0 3 31.29341378425716 31.0 31.0 34.0 28.0 34.0 4 35.16943741567787 35.0 35.0 37.0 32.0 37.0 5 35.02707859237645 35.0 35.0 37.0 32.0 37.0 6 35.11613752512361 37.0 35.0 37.0 32.0 37.0 7 35.50689434333479 36.0 35.0 37.0 35.0 37.0 8 35.57023629575081 37.0 35.0 37.0 35.0 37.0 9 37.40560443393667 39.0 37.0 39.0 35.0 39.0 10 36.89058471340166 39.0 37.0 39.0 32.0 39.0 11 36.48630174910164 38.0 35.0 39.0 32.0 39.0 12 35.07345830080414 35.0 34.0 39.0 30.0 39.0 13 34.602810245450065 35.0 33.0 39.0 28.0 39.0 14 35.250124118481935 35.0 33.0 40.0 27.0 41.0 15 35.715344181934626 35.0 34.0 40.0 30.0 41.0 16 35.91935436241859 35.0 34.0 40.0 31.0 41.0 17 35.786955931940625 35.0 34.0 40.0 31.0 41.0 18 35.89449744472805 36.0 35.0 40.0 31.0 41.0 19 35.780723707645144 36.0 35.0 40.0 31.0 41.0 20 35.48757107974774 35.0 34.0 40.0 30.0 41.0 21 35.341897047179785 35.0 34.0 40.0 30.0 41.0 22 35.14842263404335 35.0 34.0 40.0 29.0 41.0 23 35.09470286312269 35.0 34.0 39.0 29.0 41.0 24 35.22211902085744 35.0 34.0 39.0 30.0 41.0 25 35.13931953541852 35.0 34.0 39.0 30.0 41.0 26 34.89097229527833 35.0 34.0 39.0 29.0 41.0 27 34.88617273970555 35.0 34.0 39.0 29.0 41.0 28 34.985314338130124 36.0 34.0 39.0 29.0 41.0 29 34.97628691025265 36.0 34.0 39.0 29.0 41.0 30 34.93870854027437 36.0 34.0 39.0 29.0 41.0 31 34.686052220198185 35.0 34.0 39.0 29.0 41.0 32 34.53826586640237 35.0 34.0 39.0 28.0 41.0 33 34.30682642422497 35.0 33.0 39.0 27.0 41.0 34 34.11695144706462 35.0 33.0 39.0 25.0 41.0 35 33.92291504020701 35.0 33.0 39.0 24.0 41.0 36 33.644906251326546 35.0 33.0 39.0 23.0 41.0 37 33.70643210580616 35.0 33.0 39.0 23.0 41.0 38 33.77833177377769 35.0 33.0 39.0 24.0 41.0 39 33.76181201909856 35.0 33.0 39.0 23.0 41.0 40 33.46354607887107 35.0 32.0 39.0 23.0 41.0 41 33.53783768071005 35.0 33.0 39.0 23.0 41.0 42 33.53843335714193 35.0 33.0 39.0 23.0 41.0 43 33.50245791506789 35.0 33.0 39.0 23.0 41.0 44 33.48244853927773 35.0 33.0 39.0 23.0 41.0 45 33.53831938961391 35.0 33.0 39.0 23.0 41.0 46 33.56171226290601 35.0 33.0 39.0 23.0 41.0 47 33.47932112265859 35.0 33.0 39.0 23.0 41.0 48 33.53258363924617 35.0 33.0 39.0 23.0 41.0 49 33.57845395435024 35.0 33.0 39.0 24.0 41.0 50 33.36992936781704 35.0 33.0 39.0 24.0 41.0 51 33.03639163118447 35.0 32.0 38.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 1.0 13 7.0 14 19.0 15 56.0 16 184.0 17 489.0 18 1231.0 19 2609.0 20 4944.0 21 7672.0 22 11689.0 23 16553.0 24 23303.0 25 32371.0 26 41297.0 27 48004.0 28 53294.0 29 60997.0 30 73109.0 31 89845.0 32 113899.0 33 152036.0 34 276412.0 35 397672.0 36 119860.0 37 145306.0 38 206473.0 39 287862.0 40 88.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.345868838601675 25.150049555111377 30.508507422192938 12.995574184094009 2 31.04715394936704 26.0254770486932 31.043462693398745 11.883906308541013 3 27.271091375195866 25.955112481797492 34.3386007556001 12.435195387406543 4 25.812122453725493 28.79410358771624 32.73576513276525 12.658008825793022 5 22.068035384379712 32.958809274649745 32.27989502068026 12.693260320290282 6 19.224061082903763 42.765876553326656 29.123963449183403 8.886098914586182 7 87.31495272423918 4.748339396221262 6.707565782795425 1.2291420967441278 8 88.81734004403668 3.2440603077400096 6.6159303533823905 1.322669294840916 9 84.73471866169824 5.433113519040421 7.883323090098021 1.9488447291633213 10 59.845594762846034 20.11388447476196 13.64218994834087 6.3983308140511355 11 57.088687961522346 16.32762480597836 18.59511720660513 7.988570025894161 12 51.311226401339184 21.155049361320437 19.613211743361738 7.920512493978639 13 17.92040175629959 53.83046245900399 18.632306610485752 9.616829174210672 14 9.857176078446573 53.30478146841854 25.623499273745388 11.214543179389503 15 8.719392566917856 22.70210087833436 57.96508440979585 10.613422144951931 16 9.319452365264542 16.566818192724163 56.072254489951476 18.041474952059815 17 9.419116276408628 16.94291103519428 31.40303716541072 42.23493552298637 18 15.085471031945975 21.79502086482436 45.562049090013126 17.55745901321654 19 32.82204824102425 19.89706932732397 27.83880654312033 19.442075888531452 20 32.40461333170918 20.27200865230399 30.867943472106102 16.455434543880727 21 16.041367905636733 35.28610002196297 31.011302625774935 17.661229446625363 22 19.687590551122973 24.637749367411008 21.013351272837337 34.66130880862868 23 12.486227001168281 34.3141000441105 26.04282595174421 27.156847002976995 24 9.93935266444084 21.039559190212266 56.687863704064625 12.333224441282269 25 9.552278335465033 25.26152548535402 49.12752551119281 16.058670667988135 26 9.292967603691995 42.80546527358666 28.78104576972838 19.120521352992963 27 9.505630088165649 52.018286482066955 25.65136825630605 12.824715173461346 28 8.53653697438822 35.00967109063694 42.881781990731255 13.572009944243579 29 8.853477439966335 25.6446317141639 41.79890591173099 23.702984934138765 30 13.700050385643966 44.00715365406656 29.088388969788916 13.204406990500553 31 31.74078708651012 31.281871688251282 26.32926741488425 10.648073810354342 32 36.065324156871 21.959143333314877 29.784421423311393 12.191111086502739 33 35.87407095701348 27.843420613080706 20.39834188781904 15.884166542086778 34 18.284359594773917 26.290416945817903 25.21252406237484 30.212699397033337 35 18.50371248069012 22.964641459079658 36.507398199774464 22.02424786045576 36 37.999450002860726 26.642147498897238 22.978668231759197 12.379734266482842 37 15.10535767347519 44.81069393766576 28.59879000629359 11.485158382565459 38 14.754411512289115 43.46075548935903 23.961788118216163 17.82304488013569 39 18.851521074303136 40.82367608490627 27.135483859060468 13.189318981730128 40 28.007127815274785 24.45318656899603 24.68398234841396 22.85570326731522 41 12.969273985319877 23.777779008196433 29.030620813885026 34.222326192598665 42 15.102173965202532 20.710576002037573 27.092849852626603 37.09440018013329 43 15.711046637173531 20.88245010806152 30.720293233374125 32.68621002139083 44 11.51413474191661 30.673737267473943 35.43961012954463 22.372517861064818 45 10.790971557027136 52.701261117601575 22.129863921848727 14.377903403522566 46 18.332668907259038 43.43168684860868 22.767389968273655 15.468254275858632 47 16.393975132008542 30.86812803490452 25.281135282685614 27.456761550401332 48 16.996803372331453 28.126909071446104 40.09663708125008 14.77965047497236 49 22.214255261423975 27.05446079055629 38.20952860815657 12.521755339863166 50 19.036083872718113 43.994095836078706 24.25141328962886 12.71840700157432 51 15.278108452791606 39.54936224325007 24.879988040330662 20.292541263627655 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2743.0 1 3642.0 2 4541.0 3 9895.0 4 15249.0 5 12135.5 6 9022.0 7 9617.0 8 10212.0 9 11047.0 10 11882.0 11 11781.0 12 11680.0 13 11355.5 14 11031.0 15 10355.0 16 9679.0 17 9322.0 18 8965.0 19 9196.0 20 9427.0 21 9767.0 22 10107.0 23 10639.0 24 11171.0 25 12514.5 26 19138.0 27 24418.0 28 33126.0 29 41834.0 30 49349.5 31 56865.0 32 66003.0 33 75141.0 34 84309.0 35 93477.0 36 98061.5 37 102646.0 38 119652.0 39 136658.0 40 188984.5 41 241311.0 42 304561.0 43 367811.0 44 327600.5 45 287390.0 46 248147.0 47 208904.0 48 175602.5 49 142301.0 50 121006.5 51 99712.0 52 74222.5 53 48733.0 54 37271.0 55 25809.0 56 21557.5 57 17306.0 58 15774.0 59 14242.0 60 13313.5 61 12385.0 62 11029.0 63 9673.0 64 8247.5 65 6822.0 66 5727.5 67 4633.0 68 3865.5 69 3098.0 70 2814.5 71 2531.0 72 2146.5 73 1762.0 74 1435.0 75 815.0 76 522.0 77 440.0 78 358.0 79 257.0 80 156.0 81 108.0 82 60.0 83 46.5 84 33.0 85 21.0 86 9.0 87 7.5 88 6.0 89 4.0 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2167284.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.931545990377979 #Duplication Level Percentage of deduplicated Percentage of total 1 80.4462391885204 12.8163295938486 2 7.895948304971689 2.5158932711660706 3 2.7848851474430796 1.3310257741322995 4 1.4535820926821024 0.9263123984141913 5 0.941920989169828 0.7503128779130718 6 0.6749639869243704 0.6451931879720694 7 0.4873476105937865 0.543494061003301 8 0.41155074337492153 0.5245311676361447 9 0.34157054513578333 0.4897572163910289 >10 2.912562168851017 9.495362714308914 >50 0.45346255803369195 5.1394298086814665 >100 0.9786766315339347 41.23565128802286 >500 0.19782688811930166 19.129081078209953 >1k 0.01888215525367784 3.890414252975182 >5k 5.809893924208565E-4 0.5672113093248298 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7116 0.32833721838023994 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 5140 0.23716319596324248 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2185 0.10081742863417992 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.019794360130006034 0.0 2 0.0 0.0 0.0 0.08116149060298512 0.0 3 0.0 0.0 0.0 0.11613614090262282 0.0 4 0.0 0.0 0.0 0.17321218631245375 0.0 5 0.0 0.0 0.0 0.2994531404282964 0.0 6 0.0 0.0 0.0 0.42057247688812355 0.0 7 0.0 0.0 0.0 0.5115619365067061 0.0 8 0.0 0.0 0.0 0.741434901932557 0.0 9 0.0 0.0 0.0 0.8275795880927465 0.0 10 0.0 0.0 0.0 0.9629102600305267 0.0 11 0.0 0.0 0.0 1.0984716354663255 0.0 12 0.0 0.0 0.0 1.2229131022976223 0.0 13 0.0 0.0 0.0 1.2712685554823457 0.0 14 0.0 0.0 0.0 1.2896325539246356 0.0 15 0.0 0.0 0.0 1.3203161191611252 0.0 16 0.0 0.0 0.0 1.3886966359738733 0.0 17 0.0 0.0 0.0 1.4677356543950861 0.0 18 0.0 0.0 0.0 1.6076803962932407 0.0 19 0.0 0.0 0.0 1.6633260800153555 0.0 20 0.0 0.0 0.0 1.7234935522986374 0.0 21 0.0 0.0 0.0 1.8074234848778472 0.0 22 0.0 0.0 0.0 1.8935220303384328 0.0 23 0.0 0.0 0.0 2.002783207000098 0.0 24 0.0 0.0 0.0 2.0859287476860437 0.0 25 0.0 0.0 0.0 2.1517253853209826 0.0 26 0.0 0.0 0.0 2.225965770983406 0.0 27 0.0 0.0 0.0 2.2945769912941727 0.0 28 0.0 0.0 0.0 2.3636034779013735 0.0 29 0.0 0.0 0.0 2.447764113978602 0.0 30 0.0 0.0 0.0 2.5674069480511093 0.0 31 0.0 0.0 0.0 2.6771756724084153 0.0 32 4.614069960374367E-5 0.0 0.0 2.7774394126473503 0.0 33 4.614069960374367E-5 0.0 0.0 2.8749808516096644 0.0 34 4.614069960374367E-5 0.0 0.0 2.9784744408208614 0.0 35 4.614069960374367E-5 0.0 0.0 3.126401523750464 0.0 36 4.614069960374367E-5 0.0 0.0 3.238846408684787 0.0 37 4.614069960374367E-5 0.0 0.0 3.3541981576941464 0.0 38 4.614069960374367E-5 0.0 0.0 3.4686270927114307 0.0 39 4.614069960374367E-5 0.0 0.0 3.577611425175473 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGGA 30 2.1663946E-6 45.000004 4 CCGTACC 75 0.0 45.000004 31 TCTACGG 30 2.1663946E-6 45.000004 2 CGCTATA 30 2.1663946E-6 45.000004 18 TATCGTG 65 0.0 45.000004 1 CCGCAAC 30 2.1663946E-6 45.000004 13 TGCACCG 45 3.8562575E-10 45.000004 16 ACGACGA 45 3.8562575E-10 45.000004 1 TACGTAA 65 0.0 45.000004 1 CGGAATA 35 1.2125929E-7 45.0 34 TCGTTAG 25 3.8919534E-5 45.0 1 GTCGAAA 25 3.8919534E-5 45.0 42 CAACGAA 25 3.8919534E-5 45.0 8 CGTGCCG 20 7.034673E-4 45.0 40 CGCATTG 25 3.8919534E-5 45.0 37 TCGGGTG 85 0.0 45.0 5 TTATCCG 25 3.8919534E-5 45.0 1 CCGTAGA 20 7.034673E-4 45.0 28 GTATGCG 35 1.2125929E-7 45.0 1 CACTAGC 35 1.2125929E-7 45.0 31 >>END_MODULE