SRR1545142_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545142_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1088851
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4359	0.4003302563895335	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2224	0.20425200509527935	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1253	0.11507543272679183	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1202	0.11039159627901339	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACGTGC	65	0.0	45.000004	40
ACCGACG	45	3.8562575E-10	45.000004	45
ATATGCG	75	0.0	45.000004	1
ACGTGCC	65	0.0	45.000004	41
CTCGAGG	65	0.0	45.000004	2
CGGTCTA	45	3.8562575E-10	45.000004	31
AATCGCG	65	0.0	45.000004	1
ACGGTCT	45	3.8562575E-10	45.000004	30
GTGCACG	40	6.8139343E-9	45.0	1
CTCACGT	50	2.1827873E-11	45.0	45
TCGCAAG	35	1.2118471E-7	45.0	1
ACTGCGT	25	3.89067E-5	45.0	43
GTCGATG	25	3.89067E-5	45.0	1
GTCGATA	20	7.033124E-4	45.0	7
CGTATCT	25	3.89067E-5	45.0	36
GATCGCA	25	3.89067E-5	45.0	9
GCGAATT	20	7.033124E-4	45.0	26
ACGCATG	25	3.89067E-5	45.0	1
GCGAACG	20	7.033124E-4	45.0	1
TAGGTCG	20	7.033124E-4	45.0	4