SRR1545139_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545139_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1313772
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6279	0.47793681095349877	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2177	0.16570607380884964	No Hit
TTTTGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1885	0.14347999500674394	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1844	0.14035920996946197	No Hit
TTGATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1472	0.11204379450924513	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCATCG	30	2.1657397E-6	45.000004	43
GTCGACG	30	2.1657397E-6	45.000004	1
GCGAATT	55	1.8189894E-12	45.000004	14
TCTTCGA	30	2.1657397E-6	45.000004	19
GACCGTA	30	2.1657397E-6	45.000004	29
ACGGGCC	45	3.8562575E-10	45.000004	5
ACGGACC	55	1.8189894E-12	45.000004	39
GCGATAT	90	0.0	45.000004	9
TCGTAAG	65	0.0	45.000004	1
GGACCGT	30	2.1657397E-6	45.000004	8
GTGCGTA	30	2.1657397E-6	45.000004	16
CGTCAAT	30	2.1657397E-6	45.000004	43
GCCGTGC	30	2.1657397E-6	45.000004	32
CGGACCA	55	1.8189894E-12	45.000004	40
CTAGACG	40	6.8157533E-9	45.0	1
CTATGCG	35	1.2121018E-7	45.0	1
TCGCATC	20	7.033656E-4	45.0	21
TCGCAAA	20	7.033656E-4	45.0	27
GCGCACA	20	7.033656E-4	45.0	9
CATTACG	20	7.033656E-4	45.0	38