SRR1545138_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545138_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2209950
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14748	0.6673454150546393	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3255	0.14728840019004955	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2925	0.1323559356546528	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	80	0.0	45.000004	1
TGTATCG	65	0.0	45.000004	1
TACGGAC	20	7.034701E-4	45.000004	41
CGTTAGT	20	7.034701E-4	45.000004	25
CCCGTAG	20	7.034701E-4	45.000004	24
CGTAGAT	20	7.034701E-4	45.000004	41
CACTACG	40	6.8193913E-9	45.000004	1
TATTACG	65	0.0	45.000004	1
ACGTCCA	20	7.034701E-4	45.000004	14
ACCGTAA	20	7.034701E-4	45.000004	24
CCACGTA	20	7.034701E-4	45.000004	10
TCGAACA	20	7.034701E-4	45.000004	44
ATTCGAT	35	1.2126111E-7	45.0	14
GCCGATA	45	3.8562575E-10	45.0	9
GTGTCGA	25	3.891979E-5	45.0	8
GACGGTT	50	2.1827873E-11	45.0	28
TCGATTG	60	0.0	44.999996	1
TCCGTAA	30	2.1664146E-6	44.999996	12
TACGAAG	115	0.0	43.04348	1
TCGCGCA	105	0.0	42.857143	34