SRR1545137_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545137_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1684980
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5277	0.313178791439661	No Hit
TTGATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2239	0.13287991548861114	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2181	0.1294377381333903	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1815	0.10771641206423815	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	45	3.8562575E-10	45.000004	25
GCAAGCG	45	3.8562575E-10	45.000004	1
CGAACAT	45	3.8562575E-10	45.000004	41
CCGATAG	90	0.0	45.000004	11
GCGCGAC	90	0.0	45.000004	9
CACGACG	45	3.8562575E-10	45.000004	26
AAGCGCG	90	0.0	45.000004	1
TCGTCAG	45	3.8562575E-10	45.000004	1
TCGTAAA	45	3.8562575E-10	45.000004	15
ATACGCA	45	3.8562575E-10	45.000004	36
ACGACGG	45	3.8562575E-10	45.000004	27
CGGAACC	25	3.8915823E-5	45.0	35
AACCGAT	40	6.8175723E-9	45.0	15
AGCCGAA	25	3.8915823E-5	45.0	14
TCGTTAG	25	3.8915823E-5	45.0	1
TCACCGC	25	3.8915823E-5	45.0	12
GCGACAG	20	7.034225E-4	45.0	1
CTCCGTA	35	1.2123746E-7	45.0	39
GTACACG	40	6.8175723E-9	45.0	1
CATGCGT	20	7.034225E-4	45.0	39