SRR1545135_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545135_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1545429
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6573	0.4253187949753758	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2573	0.16649098729220171	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1876	0.12139024180340863	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1598	0.10340170916942804	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1569	0.10152520756372503	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCGT	20	7.0340413E-4	45.000004	25
AACCGTC	35	1.2122837E-7	45.000004	29
GGTACGA	20	7.0340413E-4	45.000004	8
ACGCCTA	40	6.8175723E-9	45.000004	7
CAAGTCG	35	1.2122837E-7	45.000004	1
ATTCGTC	40	6.8175723E-9	45.000004	38
AAGCGTG	35	1.2122837E-7	45.000004	1
TAACGTG	20	7.0340413E-4	45.000004	1
TCGATTG	30	2.165989E-6	45.000004	1
CCATGCG	20	7.0340413E-4	45.000004	1
CTACGCT	20	7.0340413E-4	45.000004	37
ACGCTAG	40	6.8175723E-9	45.000004	1
CCGACAG	20	7.0340413E-4	45.000004	11
CAGTCGC	20	7.0340413E-4	45.000004	37
TAGGCCG	20	7.0340413E-4	45.000004	1
ATACGTT	35	1.2122837E-7	45.000004	37
TAAATCG	20	7.0340413E-4	45.000004	17
GTGCGTA	20	7.0340413E-4	45.000004	16
CGTCAAT	20	7.0340413E-4	45.000004	18
ATACCGG	35	1.2122837E-7	45.000004	2