FastQCFastQC Report
Thu 26 May 2016
SRR1545133_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1545133_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1203780
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT47430.3940088720530329No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT20680.17179218794131818No Hit
TGTTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA13420.11148216451511074No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC12250.10176278057452358No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGTAG207.033419E-445.0000046
ACCGGGT302.165587E-645.0000044
CGAACGG302.165587E-645.0000042
ATCTACG207.033419E-445.0000041
ACGTTTA406.8157533E-945.00000426
ACGCATA207.033419E-445.00000434
GACAATG302.165587E-645.0000041
CGCATAG207.033419E-445.00000435
GGCAACG406.8157533E-945.0000048
TTCACGG406.8157533E-945.0000042
ACCGACT207.033419E-445.00000425
TGAACGT207.033419E-445.00000445
AAGCGTG302.165587E-645.0000043
TCTAGCG302.165587E-645.0000041
CGCCTAG302.165587E-645.00000439
TCTACCG207.033419E-445.0000041
TATCTCG302.165587E-645.0000041
CTCGGTA406.8157533E-945.00000413
CGTACAG207.033419E-445.00000415
ACGTATA302.165587E-645.00000413