SRR1545133_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545133_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1203780
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4743	0.3940088720530329	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2068	0.17179218794131818	No Hit
TGTTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1342	0.11148216451511074	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1225	0.10176278057452358	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAG	20	7.033419E-4	45.000004	6
ACCGGGT	30	2.165587E-6	45.000004	4
CGAACGG	30	2.165587E-6	45.000004	2
ATCTACG	20	7.033419E-4	45.000004	1
ACGTTTA	40	6.8157533E-9	45.000004	26
ACGCATA	20	7.033419E-4	45.000004	34
GACAATG	30	2.165587E-6	45.000004	1
CGCATAG	20	7.033419E-4	45.000004	35
GGCAACG	40	6.8157533E-9	45.000004	8
TTCACGG	40	6.8157533E-9	45.000004	2
ACCGACT	20	7.033419E-4	45.000004	25
TGAACGT	20	7.033419E-4	45.000004	45
AAGCGTG	30	2.165587E-6	45.000004	3
TCTAGCG	30	2.165587E-6	45.000004	1
CGCCTAG	30	2.165587E-6	45.000004	39
TCTACCG	20	7.033419E-4	45.000004	1
TATCTCG	30	2.165587E-6	45.000004	1
CTCGGTA	40	6.8157533E-9	45.000004	13
CGTACAG	20	7.033419E-4	45.000004	15
ACGTATA	30	2.165587E-6	45.000004	13