SRR1545130_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545130_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2285177
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10562	0.46219614498132966	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5013	0.21937031573484242	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4808	0.21039945702236632	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4000	0.1750411456092898	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2641	0.11557091638853359	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACACGA	35	1.2126293E-7	45.000004	25
CGCATTA	30	2.1664473E-6	45.000004	24
ATTGTCG	35	1.2126293E-7	45.000004	1
GTTAGCG	95	0.0	45.000004	1
TGCGCGT	30	2.1664473E-6	45.000004	37
AACGACC	30	2.1664473E-6	45.000004	31
ACATGCG	35	1.2126293E-7	45.000004	1
CCGACAA	30	2.1664473E-6	45.000004	18
ATAGTCG	30	2.1664473E-6	45.000004	1
CGCAAAA	35	1.2126293E-7	45.000004	43
CGTCCAA	45	3.8562575E-10	45.000004	44
GCATCGA	35	1.2126293E-7	45.000004	9
TGCGTAG	115	0.0	45.000004	1
ACACGGC	20	7.0347526E-4	45.0	9
TCACCGC	25	3.8920203E-5	45.0	27
CAACGAC	20	7.0347526E-4	45.0	23
CTATACG	40	6.8193913E-9	45.0	1
CGTCTTA	55	1.8189894E-12	45.0	27
TTACTCG	20	7.0347526E-4	45.0	25
GATCACG	55	1.8189894E-12	45.0	1