SRR1545127_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545127_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1441844
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7212	0.5001928086533634	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2737	0.18982636124296387	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2306	0.1599340844085768	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2238	0.15521790152055287	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1953	0.135451546769276	No Hit
AAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1544	0.10708509381042608	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAG	35	1.2122109E-7	45.000004	1
GTACCGA	25	3.8913004E-5	45.000004	8
CTAACGC	35	1.2122109E-7	45.000004	23
TCGTAAT	70	0.0	45.000004	39
CACCGTA	25	3.8913004E-5	45.000004	36
GCGTATG	25	3.8913004E-5	45.000004	1
TGCACCG	30	2.165887E-6	45.000004	1
CTCGTTA	40	6.8175723E-9	45.0	42
TCACCGT	40	6.8175723E-9	45.0	35
GTATTCG	55	1.8189894E-12	45.0	1
ATTACGC	45	3.8562575E-10	45.0	11
CCGGATA	20	7.033885E-4	45.0	22
TCGGGCA	20	7.033885E-4	45.0	5
CGCGCCT	20	7.033885E-4	45.0	17
TAACGTG	40	6.8175723E-9	45.0	42
CACGACG	110	0.0	45.0	26
AGGCGAT	45	3.8562575E-10	45.0	6
TAGCCGT	20	7.033885E-4	45.0	44
ACTACGA	20	7.033885E-4	45.0	21
GCGATAC	95	0.0	45.0	9