SRR1545124_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545124_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1928597
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10147	0.5261337645967509	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3321	0.1721977167858293	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3162	0.16395338165516177	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2224	0.11531698950065775	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2083	0.10800597532817897	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGTG	20	7.034476E-4	45.000004	1
TATCACG	35	1.212502E-7	45.000004	1
GGTAATC	125	0.0	45.000004	8
ACGCATG	40	6.8193913E-9	45.000004	1
CAGTTCG	20	7.034476E-4	45.000004	1
GTTAGTC	20	7.034476E-4	45.000004	35
TACGGCA	20	7.034476E-4	45.000004	36
ATCCGGT	20	7.034476E-4	45.000004	11
TGTTGCG	20	7.034476E-4	45.000004	1
GTTACGT	35	1.212502E-7	45.000004	29
TGATTCG	35	1.212502E-7	45.000004	15
CTCATCG	20	7.034476E-4	45.000004	21
CGTGTTA	20	7.034476E-4	45.000004	32
ATACGTT	20	7.034476E-4	45.000004	27
GATTCGT	20	7.034476E-4	45.000004	11
TGCGTAG	20	7.034476E-4	45.000004	1
AGTCGAT	20	7.034476E-4	45.000004	24
ATAGCCG	25	3.891794E-5	45.0	15
TCGATTG	95	0.0	45.0	1
CACGAAC	25	3.891794E-5	45.0	42