SRR1545123_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545123_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1085708
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3440	0.3168439396228083	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1464	0.1348428859324975	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1449	0.1334612989864678	No Hit
GGCTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1267	0.1166980440413076	No Hit
TAGAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1264	0.11642172665210168	No Hit
TGGTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1215	0.11190854262840469	No Hit
GATTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1097	0.10104005865297115	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAG	45	3.8562575E-10	45.0	1
GTTGACG	50	2.1827873E-11	45.0	1
GTGCACG	35	1.2118471E-7	45.0	1
CGGGTAG	45	3.8562575E-10	45.0	6
CGGGTAC	20	7.0331135E-4	45.0	6
CTCACTA	85	0.0	45.0	45
TCGTTAG	55	1.8189894E-12	45.0	1
CCGGGTC	20	7.0331135E-4	45.0	4
GTACCGG	35	1.2118471E-7	45.0	2
AGTCCCA	25	3.8906626E-5	45.0	15
CTACTTA	25	3.8906626E-5	45.0	28
GTCGATA	25	3.8906626E-5	45.0	9
CTACTAT	20	7.0331135E-4	45.0	38
CTGTACG	50	2.1827873E-11	45.0	1
GTACACG	55	1.8189894E-12	45.0	1
TCCGATT	20	7.0331135E-4	45.0	6
CGACGAA	35	1.2118471E-7	45.0	35
TTAGCCG	25	3.8906626E-5	45.0	1
CGTGCAT	35	1.2118471E-7	45.0	29
GGCACGG	45	3.8562575E-10	45.0	2