SRR1545122_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545122_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2221889
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7455	0.3355253120205375	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	6280	0.2826423822252147	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3278	0.14753212244176014	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3033	0.13650546899507582	No Hit
TGGTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2727	0.12273340387391089	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2252	0.10135519821197188	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCAAA	75	0.0	45.000004	12
TCACCAC	45	3.8562575E-10	45.000004	22
TCGGGCA	45	3.8562575E-10	45.000004	5
TGCGATA	75	0.0	45.000004	26
AGTGTCG	45	3.8562575E-10	45.000004	1
TGATCCG	20	7.0347113E-4	45.0	1
AACGTTG	85	0.0	45.0	1
CGGAACA	20	7.0347113E-4	45.0	20
TCGCACT	50	2.1827873E-11	45.0	23
CAAGTCG	35	1.2126111E-7	45.0	1
GGTCGAA	20	7.0347113E-4	45.0	8
CGAAAGT	55	1.8189894E-12	45.0	37
TTCACGG	20	7.0347113E-4	45.0	2
CGACAGA	20	7.0347113E-4	45.0	13
CGTTACA	35	1.2126111E-7	45.0	41
ATCCGGG	155	0.0	45.0	3
TAGCACG	55	1.8189894E-12	45.0	1
CCCCGTA	40	6.8193913E-9	45.0	34
TCAATCG	70	0.0	45.0	32
CCCGTAC	25	3.8919847E-5	45.0	15