SRR1545121_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545121_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1412448
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5315	0.3762970388998391	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2671	0.1891043068488185	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1660	0.1175264505312762	No Hit
AGTGTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1660	0.1175264505312762	No Hit
TTTATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1649	0.11674766079884003	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGACTCG	25	3.89126E-5	45.000004	1
ACCGGGT	45	3.8562575E-10	45.000004	6
CGAACAA	25	3.89126E-5	45.000004	35
TTGTGCG	90	0.0	45.000004	1
CGGCCTA	45	3.8562575E-10	45.000004	2
CCGTATG	50	2.1827873E-11	45.000004	1
ACGATGG	180	0.0	45.000004	2
TACGCCC	45	3.8562575E-10	45.000004	34
ACGTATG	25	3.89126E-5	45.000004	1
ACGTAAA	45	3.8562575E-10	45.000004	22
TCGAGAG	45	3.8562575E-10	45.000004	1
TTCGCGG	50	2.1827873E-11	45.000004	2
GACTCGG	25	3.89126E-5	45.000004	2
TGCGTAG	90	0.0	45.000004	1
CGGGTAC	40	6.8175723E-9	45.0	6
CTATGCG	75	0.0	45.0	1
TTGGCGT	35	1.2121927E-7	45.0	10
CGAACGG	80	0.0	45.0	2
CGTATGA	35	1.2121927E-7	45.0	15
ACGCATG	35	1.2121927E-7	45.0	1