##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545120_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1665845 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.849842572388187 31.0 31.0 33.0 30.0 33.0 2 31.165615648514716 31.0 31.0 33.0 30.0 34.0 3 31.30623557413805 31.0 31.0 34.0 28.0 34.0 4 35.16172392989744 35.0 35.0 37.0 32.0 37.0 5 35.04861916925044 37.0 35.0 37.0 32.0 37.0 6 35.11955794206544 37.0 35.0 37.0 32.0 37.0 7 35.5240301468624 36.0 35.0 37.0 35.0 37.0 8 35.59821772133662 37.0 35.0 37.0 35.0 37.0 9 37.43395213840423 39.0 37.0 39.0 35.0 39.0 10 36.93825596018837 39.0 37.0 39.0 32.0 39.0 11 36.49661883308471 38.0 35.0 39.0 32.0 39.0 12 35.03816321446473 35.0 34.0 39.0 30.0 39.0 13 34.53688008188037 35.0 33.0 39.0 27.0 39.0 14 35.163405358841906 35.0 33.0 40.0 27.0 41.0 15 35.65603342447827 35.0 34.0 40.0 30.0 41.0 16 35.89007200549871 35.0 34.0 40.0 31.0 41.0 17 35.74354876954339 35.0 34.0 40.0 31.0 41.0 18 35.83205040084762 36.0 35.0 40.0 31.0 41.0 19 35.69786684835624 36.0 34.0 40.0 31.0 41.0 20 35.38673586077937 35.0 34.0 39.0 30.0 41.0 21 35.22783212123577 35.0 34.0 39.0 30.0 41.0 22 35.047797964396445 35.0 34.0 39.0 29.0 41.0 23 34.97898784100562 35.0 34.0 39.0 29.0 41.0 24 35.084350584838326 35.0 34.0 39.0 30.0 41.0 25 35.00304890310923 35.0 34.0 39.0 30.0 41.0 26 34.768315779679384 35.0 34.0 39.0 29.0 41.0 27 34.744991280701385 35.0 34.0 39.0 29.0 41.0 28 34.86398734576146 35.0 34.0 39.0 29.0 41.0 29 34.86099547076709 36.0 34.0 39.0 29.0 41.0 30 34.83306730217998 36.0 34.0 39.0 29.0 41.0 31 34.54035099303957 35.0 34.0 39.0 29.0 41.0 32 34.345619790556746 35.0 34.0 39.0 27.0 41.0 33 34.078511506172546 35.0 33.0 39.0 26.0 41.0 34 33.859398083255044 35.0 33.0 39.0 24.0 41.0 35 33.639142297152496 35.0 33.0 39.0 23.0 41.0 36 33.3530670620616 35.0 33.0 39.0 23.0 41.0 37 33.387537856163085 35.0 33.0 39.0 23.0 41.0 38 33.4417487821496 35.0 33.0 39.0 23.0 41.0 39 33.43853719883903 35.0 33.0 39.0 23.0 41.0 40 33.07717284621318 35.0 32.0 39.0 23.0 41.0 41 33.21070987997083 35.0 32.0 39.0 23.0 41.0 42 33.19944112447437 35.0 32.0 39.0 23.0 41.0 43 33.16001608793135 35.0 32.0 39.0 23.0 41.0 44 33.124629842512356 35.0 32.0 39.0 23.0 41.0 45 33.228781789422186 35.0 33.0 39.0 23.0 41.0 46 33.22468657047925 35.0 33.0 38.0 23.0 41.0 47 33.167151205544336 35.0 32.0 38.0 23.0 41.0 48 33.229836509399135 35.0 33.0 38.0 23.0 41.0 49 33.28891283402717 35.0 33.0 38.0 23.0 41.0 50 33.05054972101246 35.0 32.0 38.0 23.0 40.0 51 32.75668204424782 35.0 32.0 38.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 2.0 13 4.0 14 15.0 15 55.0 16 152.0 17 449.0 18 1097.0 19 2311.0 20 3963.0 21 6667.0 22 10108.0 23 14289.0 24 20160.0 25 27351.0 26 34944.0 27 39323.0 28 42624.0 29 47518.0 30 56448.0 31 69242.0 32 87964.0 33 117201.0 34 214694.0 35 311161.0 36 90571.0 37 106859.0 38 151685.0 39 208894.0 40 92.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.308342012612215 24.541418919527327 31.305193460375964 13.84504560748449 2 29.741722669275955 26.593110403428888 31.40376205469296 12.261404872602192 3 27.165612647034987 26.01124354306673 34.579207549321815 12.243936260576465 4 24.825719079506197 28.890503017987868 33.229922351719395 13.053855550786539 5 22.570527269944083 32.24111486963073 32.897958693635964 12.290399166789227 6 19.375332038695074 41.87496435742821 29.105228877836776 9.644474726039938 7 86.32940039439444 4.984977593953819 7.512883851738908 1.172738159912837 8 88.88684121271787 3.016126950586639 7.1112858639309176 0.9857459727645729 9 84.88887021301503 4.600187892631067 8.699488848002066 1.8114530463518514 10 61.1042443924855 20.260048203764455 12.484955082855848 6.150752320894201 11 58.65419651888381 14.211046045700531 19.87789980460367 7.25685763081199 12 52.55362893906697 20.39229340064652 19.57427011516678 7.479807545119745 13 17.724938394628552 53.42675939238044 19.15568375208978 9.692618460901224 14 9.390009274572364 53.91840177207363 25.84424121091698 10.847347742437021 15 8.121283792909905 23.307030365970423 59.209050061680415 9.362635779439264 16 8.572106048281803 16.197425330688027 57.89746344948059 17.333005171549573 17 9.481914583889859 16.20168743190393 32.014503150052974 42.30189483415324 18 14.766559914037622 22.895167317487523 45.429316653109986 16.908956115364877 19 33.85543072734858 18.809853257656027 28.85418511326084 18.480530901734554 20 33.96474461909722 19.292131020593153 30.024161911822528 16.718962448487105 21 16.502495730395083 35.13622215752366 31.457968778607853 16.903313333473402 22 19.406607457476536 24.434146033994757 20.71321161332537 35.44603489520334 23 13.177636574831391 35.748403963153834 24.8506313612611 26.223328100753672 24 9.869045439401624 20.213105060794973 57.43493542316362 12.482914076639783 25 9.016805285005509 25.54511374107435 50.23804735734717 15.20003361657297 26 8.698108167326492 42.79017555654938 30.91650183540485 17.595214440719275 27 8.89644594785229 51.756015715747864 26.483796511680257 12.863741824719588 28 8.068157601697637 34.841356788896924 44.373276025080365 12.717209584325072 29 8.556018116931648 24.34380149413661 43.95282874457107 23.14735164436067 30 12.517190975150749 44.24259159765764 29.985742971284846 13.254474455906761 31 32.74638396729588 31.13987195687474 25.723701784979998 10.390042290849388 32 36.69915268227236 22.710516284528275 28.945790274605383 11.644540758593987 33 37.274836494391735 26.868045946651698 20.338206735920807 15.518910823035755 34 18.653476163748728 26.285638819938228 24.557987087634203 30.50289792867884 35 18.641950481587422 24.3225510176517 36.59115944160471 20.444339059156164 36 38.57255627024123 26.201357269133684 22.633918521831262 12.592167938793825 37 16.086790787858416 45.57806998850433 27.60767058159673 10.727468642040526 38 16.021538618538937 44.00151274578367 23.808937806338527 16.168010829338865 39 19.4500088543652 40.82054452845253 26.444957363980443 13.284489253201828 40 28.537228853824935 24.613394403440896 25.593317505530226 21.256059237203942 41 13.364808850763426 23.86056325768604 27.628800998892455 35.145826892658086 42 15.837067674363462 20.509110991718916 25.79267578916406 37.86114554475357 43 15.979758020704207 21.863378645672316 29.13950577634774 33.01735755727574 44 10.859293631760458 31.115920148633275 36.20072695839049 21.82405926121578 45 10.59852507286092 53.74959855208618 21.227004913422316 14.424871461630584 46 17.496225639240144 45.006288100033316 22.9725454649142 14.524940795812336 47 17.614543970177298 29.83398815616099 25.226656741773695 27.324811131888023 48 17.415785982489368 25.995215641311166 41.51070477745529 15.07829359874418 49 21.40769399313862 28.135450777233178 38.293178537018754 12.163676692609457 50 17.901125254750593 44.83190212774898 24.761007176538033 12.505965440962393 51 15.907362329628508 40.43689538942699 24.590523127902056 19.065219153042452 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2222.0 1 2749.5 2 3277.0 3 8439.0 4 13601.0 5 10995.0 6 8389.0 7 8995.5 8 9602.0 9 10161.5 10 10721.0 11 10587.5 12 10454.0 13 10452.0 14 10450.0 15 9452.0 16 8454.0 17 8169.5 18 7885.0 19 8456.0 20 9027.0 21 7681.5 22 6336.0 23 7498.0 24 8660.0 25 9945.5 26 13544.0 27 15857.0 28 20988.0 29 26119.0 30 33500.0 31 40881.0 32 44702.5 33 48524.0 34 63069.5 35 77615.0 36 75997.0 37 74379.0 38 92952.5 39 111526.0 40 147047.0 41 182568.0 42 224363.0 43 266158.0 44 253724.5 45 241291.0 46 206461.0 47 171631.0 48 141669.5 49 111708.0 50 92054.0 51 72400.0 52 55081.5 53 37763.0 54 28265.5 55 18768.0 56 15409.0 57 12050.0 58 10574.5 59 9099.0 60 8354.5 61 7610.0 62 6790.0 63 5970.0 64 4987.0 65 4004.0 66 3467.5 67 2931.0 68 2605.0 69 2279.0 70 2005.5 71 1732.0 72 1451.0 73 1170.0 74 942.5 75 546.5 76 378.0 77 276.5 78 175.0 79 153.0 80 131.0 81 100.0 82 69.0 83 45.0 84 21.0 85 14.5 86 8.0 87 5.0 88 2.0 89 1.0 90 0.0 91 1.5 92 3.0 93 1.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1665845.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.615899320255245 #Duplication Level Percentage of deduplicated Percentage of total 1 81.4250363429236 13.529502060221429 2 7.251051307853482 2.409654769945971 3 2.596905891066321 1.2944978049040716 4 1.3857432064691166 0.9210147840967406 5 0.8908321792834376 0.7400988901108584 6 0.6483136317722427 0.6463388420085968 7 0.5019628606598282 0.5838395048661712 8 0.3702497366060656 0.4921625877437927 9 0.30687168880274035 0.45890541768447296 >10 2.921682891543314 10.192357573094766 >50 0.45381432544923955 5.382891853607788 >100 1.115128081445786 48.50148047367088 >500 0.12225054113442742 12.380458336693078 >1k 0.009794553740740477 2.035039798065355 >5k 3.627612496570547E-4 0.4317573032860061 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7163 0.4299919860491222 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1877 0.11267554904567953 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1697 0.1018702220194556 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.018729233512121475 0.0 2 0.0 0.0 0.0 0.07419657891340431 0.0 3 0.0 0.0 0.0 0.10721285593797743 0.0 4 0.0 0.0 0.0 0.1658617698525373 0.0 5 0.0 0.0 0.0 0.29318453997820926 0.0 6 0.0 0.0 0.0 0.42110760604978253 0.0 7 0.0 0.0 0.0 0.5106717611782609 0.0 8 0.0 0.0 0.0 0.7544519448087907 0.0 9 0.0 0.0 0.0 0.844916543856121 0.0 10 0.0 0.0 0.0 0.9908484883047343 0.0 11 0.0 0.0 0.0 1.1143293643766377 0.0 12 0.0 0.0 0.0 1.2249038776116625 0.0 13 0.0 0.0 0.0 1.2703462807163932 0.0 14 0.0 0.0 0.0 1.2852936497693364 0.0 15 0.0 0.0 0.0 1.3109863162539133 0.0 16 0.0 0.0 0.0 1.3713760884115869 0.0 17 0.0 0.0 0.0 1.4434116019197465 0.0 18 0.0 0.0 0.0 1.567372714748371 0.0 19 0.0 0.0 0.0 1.6195384324471964 0.0 20 0.0 0.0 0.0 1.6727846828486443 0.0 21 0.0 0.0 0.0 1.7542448427074548 0.0 22 0.0 0.0 0.0 1.8318030789179065 0.0 23 0.0 0.0 0.0 1.9301315548565443 0.0 24 0.0 0.0 0.0 2.004388163364539 0.0 25 0.0 0.0 0.0 2.067659356062539 0.0 26 0.0 0.0 0.0 2.1349525315980777 0.0 27 0.0 0.0 0.0 2.198283753890668 0.0 28 0.0 0.0 0.0 2.265997136588338 0.0 29 0.0 0.0 0.0 2.34367543198797 0.0 30 0.0 0.0 0.0 2.458812194411845 0.0 31 0.0 0.0 0.0 2.5673457014308054 0.0 32 0.0 0.0 0.0 2.6572700341268245 0.0 33 0.0 0.0 0.0 2.7450333014175987 0.0 34 0.0 0.0 0.0 2.845462813166891 0.0 35 0.0 0.0 0.0 2.9861121532915726 0.0 36 0.0 0.0 0.0 3.096386518553647 0.0 37 0.0 0.0 0.0 3.2109229850316208 0.0 38 0.0 0.0 0.0 3.312853236645666 0.0 39 0.0 0.0 0.0 3.4141831923138106 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTCA 30 2.1660908E-6 45.000004 6 GATCGGA 60 0.0 45.000004 9 CGTTGTG 30 2.1660908E-6 45.000004 15 GACCGTA 30 2.1660908E-6 45.000004 17 CACGACG 65 0.0 45.000004 26 TCTACCG 65 0.0 45.000004 12 GTACGCC 30 2.1660908E-6 45.000004 16 TCACGAA 20 7.0342014E-4 45.0 37 CTATGCG 75 0.0 45.0 1 ACTATCG 40 6.8175723E-9 45.0 1 ACACGCG 50 2.1827873E-11 45.0 1 GGTCGAA 25 3.891563E-5 45.0 11 TAAACGG 110 0.0 45.0 2 ATTCGTC 20 7.0342014E-4 45.0 14 GATTTCG 40 6.8175723E-9 45.0 13 GCGTTAA 20 7.0342014E-4 45.0 12 ACGGGTA 35 1.2123746E-7 45.0 5 TCTAGCG 35 1.2123746E-7 45.0 1 CGTTAGG 245 0.0 45.0 2 ATCCGCC 20 7.0342014E-4 45.0 18 >>END_MODULE