SRR1545118_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545118_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1737728
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7364	0.4237717295226871	No Hit
TTTGACGGGCAGGACACTTATTAATACACCTAATCGGAGGAGCTACTCTAG	2791	0.16061201753093693	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2480	0.14271508544490277	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2175	0.12516343179139658	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1893	0.10893534546258102	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGTC	30	2.1661454E-6	45.000004	16
CGGGTAC	30	2.1661454E-6	45.000004	6
AGCGTCG	35	1.212411E-7	45.000004	17
TAATACG	20	7.034284E-4	45.000004	1
CGAACGG	20	7.034284E-4	45.000004	2
GCGACTA	20	7.034284E-4	45.000004	21
GTCGATG	60	0.0	45.000004	1
GTCGATA	40	6.8193913E-9	45.000004	9
GGTCGCG	20	7.034284E-4	45.000004	28
CACGGAT	35	1.212411E-7	45.000004	19
CGAAACA	20	7.034284E-4	45.000004	17
ACGTTAG	40	6.8193913E-9	45.000004	1
ACGTTAC	20	7.034284E-4	45.000004	1
TCTTCGA	65	0.0	45.000004	27
TAGCGAA	65	0.0	45.000004	1
GACCGAC	85	0.0	45.000004	31
ACCGACA	85	0.0	45.000004	32
CCGTGAG	40	6.8193913E-9	45.000004	2
GCACGGA	20	7.034284E-4	45.000004	3
CCTACCG	20	7.034284E-4	45.000004	37