##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545118_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1737728 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.89611953078963 31.0 31.0 33.0 30.0 33.0 2 31.212214454736298 31.0 31.0 33.0 30.0 34.0 3 31.341868808006776 31.0 31.0 34.0 28.0 34.0 4 35.190700155605484 37.0 35.0 37.0 33.0 37.0 5 35.07146285264437 37.0 35.0 37.0 32.0 37.0 6 35.16695593326458 37.0 35.0 37.0 32.0 37.0 7 35.569137402401296 36.0 35.0 37.0 35.0 37.0 8 35.63650237551562 37.0 35.0 37.0 35.0 37.0 9 37.4787481124779 39.0 37.0 39.0 35.0 39.0 10 37.01659753425162 39.0 37.0 39.0 33.0 39.0 11 36.555271020550975 39.0 35.0 39.0 32.0 39.0 12 34.89298267623011 35.0 34.0 39.0 30.0 39.0 13 34.35043286406158 35.0 33.0 39.0 27.0 39.0 14 34.93253029242781 35.0 33.0 40.0 27.0 41.0 15 35.48651630174573 35.0 33.0 40.0 30.0 41.0 16 35.75049950279906 35.0 34.0 40.0 31.0 41.0 17 35.60723542464643 35.0 34.0 40.0 31.0 41.0 18 35.70257312997201 36.0 35.0 39.0 31.0 41.0 19 35.54878323880377 36.0 34.0 39.0 31.0 41.0 20 35.22115256242634 35.0 34.0 39.0 30.0 41.0 21 35.03901013277107 35.0 34.0 39.0 30.0 41.0 22 34.868170968068654 35.0 34.0 39.0 29.0 41.0 23 34.85414288081909 35.0 34.0 39.0 29.0 41.0 24 34.962745032594285 35.0 34.0 39.0 30.0 41.0 25 34.88977388866382 35.0 34.0 39.0 30.0 41.0 26 34.63630844412935 35.0 34.0 38.0 29.0 41.0 27 34.60484955067766 35.0 34.0 39.0 29.0 41.0 28 34.71922993702121 35.0 34.0 39.0 29.0 41.0 29 34.73726498048026 35.0 34.0 38.0 29.0 41.0 30 34.69468179139658 35.0 34.0 38.0 29.0 41.0 31 34.397997845462584 35.0 34.0 38.0 29.0 41.0 32 34.198401015578966 35.0 34.0 39.0 27.0 41.0 33 33.942961153874485 35.0 33.0 39.0 26.0 41.0 34 33.74194983334561 35.0 33.0 38.0 24.0 41.0 35 33.482812039628755 35.0 33.0 38.0 23.0 41.0 36 33.197236276333236 35.0 33.0 38.0 23.0 41.0 37 33.18822911295669 35.0 32.0 38.0 23.0 41.0 38 33.27373098666765 35.0 32.0 38.0 23.0 41.0 39 33.290639846972596 35.0 33.0 38.0 23.0 41.0 40 32.824688904132294 35.0 32.0 38.0 22.0 41.0 41 33.01261129474808 35.0 32.0 38.0 23.0 41.0 42 33.02203394317177 35.0 32.0 38.0 23.0 41.0 43 32.99900156986594 35.0 32.0 38.0 23.0 41.0 44 32.95031731087949 35.0 32.0 38.0 23.0 41.0 45 33.03044147300383 35.0 32.0 38.0 23.0 40.0 46 33.059408031636714 35.0 32.0 38.0 23.0 40.0 47 33.00649814010018 35.0 32.0 38.0 23.0 41.0 48 33.05534180262964 35.0 33.0 38.0 23.0 41.0 49 33.1185801230112 35.0 32.0 38.0 23.0 40.0 50 32.87274936008397 35.0 32.0 38.0 23.0 40.0 51 32.5380445040881 35.0 31.0 38.0 21.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 2.0 11 0.0 12 1.0 13 6.0 14 13.0 15 53.0 16 165.0 17 476.0 18 1242.0 19 2418.0 20 4490.0 21 7016.0 22 10761.0 23 15298.0 24 21476.0 25 28754.0 26 36330.0 27 41567.0 28 45420.0 29 50834.0 30 59837.0 31 73154.0 32 93784.0 33 125022.0 34 239658.0 35 347423.0 36 83159.0 37 99476.0 38 142651.0 39 207114.0 40 126.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.874468271213907 24.753874024012966 31.199301616823803 14.172356087949323 2 31.60172362993518 28.283137522097817 29.257340619475546 10.857798228491456 3 27.69673965085445 26.16312794637596 33.67120746169711 12.46892494107248 4 25.25320418385386 28.971047252504416 32.518783146729525 13.256965416912198 5 21.146635146582206 33.99916442619328 32.073373968768415 12.780826458456099 6 18.896858426635237 41.921462967737185 29.895645348408955 9.286033257218621 7 86.32570805097231 5.1550645440483205 7.471480001473188 1.0477474035061873 8 88.4396177077195 3.255630340306423 7.19456669858574 1.1101852533883323 9 84.85263516499705 4.778538413376547 8.621084542575133 1.747741879051267 10 65.17590785209192 16.219051543164408 12.391409932969948 6.213630671773719 11 62.732257292280494 13.640051837802003 16.70825353565115 6.919437334266353 12 56.17524721935769 20.1093611888627 17.32066238214496 6.394729209634649 13 17.320317103712433 57.92845600692398 17.253448180612846 7.497778708750737 14 8.25497431128462 57.101111336181496 25.65211586623453 8.991798486299352 15 7.176727312905126 21.698332535356514 63.141009409988214 7.9839307417501475 16 7.562000497200942 14.041553108426635 61.86779519004125 16.528651204331172 17 8.026054710518563 15.007181791396581 31.567023147466116 45.39974035061874 18 14.666909896140249 21.769920263700648 46.73533487404243 16.827834966116676 19 33.788774767972896 17.138067637743077 30.5950068134944 18.47815078078963 20 34.02367919490277 19.112427261343548 29.478951826753093 17.38494171700059 21 15.067260238656452 34.34035706393636 32.91752218989393 17.67486050751326 22 17.60528690335887 24.00364153653506 21.038562997200945 37.35250856290513 23 11.521308282999412 34.254670466263995 25.357305631261053 28.866715619475546 24 8.953184848261639 19.287310787418974 59.883077213464944 11.876427150854449 25 7.703507108131998 23.953691256629345 51.579361096788446 16.763440538450205 26 8.43043330141426 43.54127918753683 30.72414094725987 17.30414656378904 27 8.133666488656452 54.26677822996464 26.65589781599882 10.943657465380083 28 7.228921902622274 36.73699221051856 44.69686855480259 11.337217332056571 29 8.052756242634059 25.766460573806715 42.37251169342958 23.80827149012964 30 12.644556570418386 44.64254474808486 29.84460168680024 12.868296994696523 31 33.87676322186211 29.673113398644666 27.199768893635827 9.250354485857395 32 37.850687794637594 20.91823346346494 31.188310253388334 10.042768488509134 33 38.35824709045374 27.02845324469652 20.165296294932233 14.448003369917501 34 19.99662778064231 25.665811910724806 24.115224016647023 30.222336291985858 35 19.372537013847968 24.526393083382438 35.61345619107248 20.48761371169711 36 41.072020477312904 24.897394759133764 22.78636242265763 11.244222340895698 37 15.01144022539776 47.84649841632292 26.978560511196232 10.163500847083087 38 16.290293993076016 44.431982450648206 22.14759732248085 17.130126233794932 39 20.559143893635827 40.90686229375368 25.854161295668828 12.67983251694166 40 28.78425162050678 22.492012558927517 25.6784721199175 23.045263700648203 41 12.26710969725987 23.7382950611373 27.490608426635237 36.50398681496759 42 16.495274289186803 19.2676874631703 26.58977699616971 37.64726125147318 43 17.402205638626988 19.4638056128462 29.900133968031824 33.233854780494994 44 10.540890173836182 32.23318033662345 35.76762301119623 21.458306478344134 45 9.92163330509723 56.62813743002357 20.581817177371832 12.868412087507366 46 17.687232984678843 43.717946652180316 23.50264253093695 15.092177832203891 47 18.621038505450795 29.133903579846788 24.91908975397761 27.325968160724806 48 19.285699488067177 25.70609439451974 40.61423882218621 14.39396729522687 49 23.90834468915734 26.033015523718326 38.59902125073659 11.459618536387744 50 18.85410144740719 46.7306736152033 22.861748213759576 11.553476723629934 51 17.375734292133178 40.39510211034178 23.5273299388627 18.701833658662345 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2788.0 1 3735.0 2 4682.0 3 9624.5 4 14567.0 5 11834.5 6 9102.0 7 9635.0 8 10168.0 9 10821.0 10 11474.0 11 11521.5 12 11569.0 13 11320.5 14 11072.0 15 10507.5 16 9943.0 17 9211.0 18 8479.0 19 8592.5 20 8706.0 21 8562.5 22 8419.0 23 9199.0 24 9979.0 25 11603.0 26 16968.5 27 20710.0 28 24135.5 29 27561.0 30 33006.5 31 38452.0 32 44979.0 33 51506.0 34 57472.0 35 63438.0 36 59537.0 37 55636.0 38 76620.5 39 97605.0 40 147579.5 41 197554.0 42 241603.5 43 285653.0 44 279551.5 45 273450.0 46 225926.5 47 178403.0 48 150323.0 49 122243.0 50 98806.0 51 75369.0 52 59704.5 53 44040.0 54 32239.0 55 20438.0 56 16502.5 57 12567.0 58 11205.0 59 9843.0 60 9069.0 61 8295.0 62 7393.5 63 6492.0 64 5553.0 65 4614.0 66 3797.5 67 2981.0 68 2619.5 69 2258.0 70 1985.5 71 1713.0 72 1411.5 73 1110.0 74 968.0 75 617.5 76 409.0 77 306.0 78 203.0 79 152.5 80 102.0 81 74.5 82 47.0 83 33.0 84 19.0 85 15.0 86 11.0 87 7.0 88 3.0 89 2.0 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1737728.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.759000684807189 #Duplication Level Percentage of deduplicated Percentage of total 1 81.81924553847968 12.893895464713086 2 7.370416753073185 2.323008053179894 3 2.4638049339132664 1.1648131092231149 4 1.3147317071935887 0.8287543149600596 5 0.8330036568219571 0.6563652599152058 6 0.6148983494912966 0.5814110106432092 7 0.46681876519035864 0.5149618068220996 8 0.3764806675708139 0.47463672784520994 9 0.28882151905461684 0.4096384664911884 >10 2.8382325324373245 9.469747912061175 >50 0.4170372179139104 4.649493651397102 >100 0.9546414318010467 40.44763203744769 >500 0.22391014005007276 21.501244313559805 >1k 0.017590321967927154 3.659117826388768 >5k 3.664650409984824E-4 0.42528004535238134 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7364 0.4237717295226871 No Hit TTTGACGGGCAGGACACTTATTAATACACCTAATCGGAGGAGCTACTCTAG 2791 0.16061201753093693 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2480 0.14271508544490277 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2175 0.12516343179139658 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1893 0.10893534546258102 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.014271508544490276 0.0 2 0.0 0.0 0.0 0.07371694534472599 0.0 3 0.0 0.0 0.0 0.11043155200353565 0.0 4 0.0 0.0 0.0 0.1739052371832646 0.0 5 0.0 0.0 0.0 0.3020610820565704 0.0 6 0.0 0.0 0.0 0.4239443687389511 0.0 7 0.0 0.0 0.0 0.5047395219505009 0.0 8 0.0 0.0 0.0 0.6922257108131997 0.0 9 0.0 0.0 0.0 0.768935069239835 0.0 10 0.0 0.0 0.0 0.9062983389805539 0.0 11 0.0 0.0 0.0 1.0544803329404833 0.0 12 0.0 0.0 0.0 1.1794135791101945 0.0 13 0.0 0.0 0.0 1.229306312610489 0.0 14 0.0 0.0 0.0 1.2488720904537418 0.0 15 0.0 0.0 0.0 1.281673541543901 0.0 16 0.0 0.0 0.0 1.3636196228638775 0.0 17 0.0 0.0 0.0 1.453737293753683 0.0 18 0.0 0.0 0.0 1.6062352681202121 0.0 19 0.0 0.0 0.0 1.657911940188568 0.0 20 0.0 0.0 0.0 1.7171271913671184 0.0 21 0.0 0.0 0.0 1.7994760975250441 0.0 22 0.0 0.0 0.0 1.8746317030053035 0.0 23 0.0 0.0 0.0 1.9710794784914556 0.0 24 0.0 0.0 0.0 2.0392144225103124 0.0 25 5.754640542133176E-5 0.0 0.0 2.094171239687684 0.0 26 5.754640542133176E-5 0.0 0.0 2.1555157078668237 0.0 27 5.754640542133176E-5 0.0 0.0 2.210184793017089 0.0 28 5.754640542133176E-5 0.0 0.0 2.2681915696817914 0.0 29 5.754640542133176E-5 0.0 0.0 2.3335642862404242 0.0 30 5.754640542133176E-5 0.0 0.0 2.4338101244843844 0.0 31 5.754640542133176E-5 0.0 0.0 2.5300277143488508 0.0 32 5.754640542133176E-5 0.0 0.0 2.6112832388037712 0.0 33 5.754640542133176E-5 0.0 0.0 2.688337875662935 0.0 34 5.754640542133176E-5 0.0 0.0 2.774312205362404 0.0 35 5.754640542133176E-5 0.0 0.0 2.900511472451385 0.0 36 5.754640542133176E-5 0.0 0.0 2.9996639289923395 0.0 37 5.754640542133176E-5 0.0 0.0 3.0969749005598115 0.0 38 5.754640542133176E-5 0.0 0.0 3.18289168385386 0.0 39 5.754640542133176E-5 0.0 0.0 3.2669669821744254 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCGTC 30 2.1661454E-6 45.000004 16 CGGGTAC 30 2.1661454E-6 45.000004 6 AGCGTCG 35 1.212411E-7 45.000004 17 TAATACG 20 7.034284E-4 45.000004 1 CGAACGG 20 7.034284E-4 45.000004 2 GCGACTA 20 7.034284E-4 45.000004 21 GTCGATG 60 0.0 45.000004 1 GTCGATA 40 6.8193913E-9 45.000004 9 GGTCGCG 20 7.034284E-4 45.000004 28 CACGGAT 35 1.212411E-7 45.000004 19 CGAAACA 20 7.034284E-4 45.000004 17 ACGTTAG 40 6.8193913E-9 45.000004 1 ACGTTAC 20 7.034284E-4 45.000004 1 TCTTCGA 65 0.0 45.000004 27 TAGCGAA 65 0.0 45.000004 1 GACCGAC 85 0.0 45.000004 31 ACCGACA 85 0.0 45.000004 32 CCGTGAG 40 6.8193913E-9 45.000004 2 GCACGGA 20 7.034284E-4 45.000004 3 CCTACCG 20 7.034284E-4 45.000004 37 >>END_MODULE